Re: [Jmol-users] weird trace being drawn on non-selected residues

[Robert H. <ha...@st...>]

Misplaced line of code. see
http://chemapps.stolaf.edu/jmol/docs/examples-12/Jmol-12.zip

Thank you, Angel!

Bob


2011/11/2 Angel Herráez <ang...@ua...>

> Hello users
>
> I have a resilient pdb file that is rendering a funny trace portion over a
> terminal DNA
> nucleotide when I am selecting just protein.
>
> I cannot see what's going on. Probably the affected residue has something
> funny in its atom
> IDs, missing atoms...
> But the issue is: it is not selected as protein, but it is affected by the
> trace command applied
> to protein.
>
> Tested in 12.2.3
>
> load =1tau;
> select nucleic; cartoon only;
> select protein; trace -0.8;
>
> See a thick white trace portion on one end of the DNA
> That's residues 957-958
>
> Any hints? I'd like to avoid it, but selections are ok.
> Must be in the algorithm for trace rendering
>
>
>
>
>
>
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-- 
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
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If nature does not answer first what we want,
it is better to take what answer we get.

-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900