Re: [Jmol-users] Every third or fourth alpha carbon?

[Robert H. <ha...@st...>]

not so new --

load xxxx.pdb filter "biomolecule 1"

for example -- is that what you mean?

On Wed, Jan 12, 2011 at 11:49 AM, Rolf Huehne <rh...@fl...>wrote:

> On 01/03/2011 09:28 PM, Robert Hanson wrote:
> > Angel's probably got the best idea. You can do that by using the extended
> > select command:
> >
> >  select {*.ca} (resno % 2 == 0)
> >
> > for example. That is, you can do any math you want on any atom property
> by
> > including it in parentheses after the selection in braces. But whether or
> > not you can connect them.... I guess they are in order in the file. Maybe
> > it's simplest just to do a FOR loop.
> >
> Did I miss a new option to apply the biomolecule symmetry operations
> after loading a PDB file?
>
> Or would it still be necessary to produce a new file (or maybe string
> for 'load inline') with the reduced atom set to be able to build the
> biomolecule?
>
> Regards,
> Rolf
>
>
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-- 
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107


If nature does not answer first what we want,
it is better to take what answer we get.

-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900