Re: [Jmol-users] Jmol model kit and docking

[Robert H. <ha...@st...>]

Right, you need the signed applet. Click the link there in that example
text.

On Fri, May 28, 2010 at 10:00 AM, Mio_libero <pin...@li...>wrote:

>  When I try to load a smile string i receive this message error from Jmol
> script ERROR: java.security.AccessControlException: access denied
> (java.net.SocketPermission cheminfo.informatics.indiana.edu:80connect,resolve)
> ----
>          load >> "$CC1CCCC1(C)C" <<
> What happens?
> Pino
>
> Il 28/05/2010 4.30, Robert Hanson ha scritto:
>
> I have two new demos up at
> http://chemapps.stolaf.edu/jmol/docs/examples-11/new.htm
>
> 137. set picking dragMinimizeMolecule -- responsive docking
> With Jmol 12.0.RC15 you can move a small molecule around and watch it react
> to its environment. Grab the caffeine molecule and move it toward the
> protein. Holding SHIFT down allows rotation. CTRL-Z undoes an action; CTRL-Y
> does a redo.
> Finally I think I have a visualization for the "solvent surface"! -- Just
> roll the water molecule along and see where it settles.
>
>
> 136. set ModelKitMode
> Jmol 12.0.RC15 represents a first attempt at creating a model kit option
> for Jmol. Click on the magenta bar in the top left corner.
>
>
> Give them a try!
>
> Bob
>
>
> --
> Robert M. Hanson
> Professor of Chemistry
> St. Olaf College
> 1520 St. Olaf Ave.
> Northfield, MN 55057
> http://www.stolaf.edu/people/hansonr
> phone: 507-786-3107
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>
>
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-- 
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107


If nature does not answer first what we want,
it is better to take what answer we get.

-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900