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Re: [Jmol-users] problem with H-bond width -- a bug?
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From: Robert H. <ha...@st...> - 2010-03-05 14:57:46
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I'll check that out. Don't try to get around it! On Thu, Mar 4, 2010 at 6:06 PM, Jeff Cohlberg <coh...@cs...> wrote: > I am working on a student exercise on lysozyme, file 2LYZ, in which I > want the students to see the locations of the helices and sheets in the > overall structure. I am using Jmol 11.8.18. > > To get a view of the beta sheet with clearly visibile H-bonds, I type > wireframe 100;spacefill off > restrict sheet; hbonds calculate; hbonds 40 > Then to show where this is located in the molecule I type > select not sheet; wireframe > Now I want to do something similar with one of the helices. I type > select 5-14 > and immediately the H-bonds in the sheet shrink to the narrow default > wireframe width. > Typing select sheet;hbonds 40 will not restore them. > When I type > select 5-14; hbonds calculate; hbonds 40 > I see only the narrow H-bonds, and I have no control over their width > any more. > > Does anyone know why this is happening and how to get around it? > > Jeff Cohlberg > > -- > Jeffrey A. Cohlberg, Professor and Chair > Department of Chemistry and Biochemistry > California State University, Long Beach > Long Beach, CA 90840 > 562-985-4944 fax 775-248-1263 > coh...@cs... > > > > ------------------------------------------------------------------------------ > Download Intel® Parallel Studio Eval > Try the new software tools for yourself. Speed compiling, find bugs > proactively, and fine-tune applications for parallel performance. > See why Intel Parallel Studio got high marks during beta. > http://p.sf.net/sfu/intel-sw-dev > _______________________________________________ > Jmol-users mailing list > Jmo...@li... > https://lists.sourceforge.net/lists/listinfo/jmol-users > -- Robert M. Hanson Professor of Chemistry St. Olaf College 1520 St. Olaf Ave. Northfield, MN 55057 http://www.stolaf.edu/people/hansonr phone: 507-786-3107 If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 |