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Re: [Jmol-users] interactive measurements mode -- Angles don't report?
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From: Bob H. <ha...@st...> - 2008-04-19 20:06:03
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OK, well, this report looks a lot better -- at least it is the expected
report. The only thing I can think of is that you somehow have
set measurementLabels off
or
set measurementNumbers off
Please send what you get from
show state
There's something simple wrong, but I don't think it's with the applet
itself.
Bob
Thomas Stout wrote:
>
> As a follow-up (if means anything): I get exactly the same behavior
> when I type the commands into the console: the dotted lines for the
> angles are drawn, but /*the value of the angle is not drawn in the
> applet*/. In this case the angle value is actually calculated and
> reported in the console output (it wasn't from my html link activation):
>
> set pickingStyle MEASURE;set picking MEASURE ANGLE;
> Script completed
> Jmol script terminated
> pending
> Atom #1:[086]1:Z.C6 #4204
> Atom #2:[086]1:Z.C1 #4209
> Atom #3:[086]1:Z.C2 #4208
> Angle [086]1:Z.C6 #4204 - [086]1:Z.C1 #4209 - [086]1:Z.C2 #4208 :
> 118.205696
> measureCompleted: [3, 2097, 2100, 2099, 118.2 °]
> Script completed
>
> -Tom
>
> On Sat, Apr 19, 2008 at 12:24 PM, Thomas Stout <tho...@gm...
> <mailto:tho...@gm...>> wrote:
>
>
> OK - thanks -- I've probably been distracted by the fact that the
> Distance and Torsion measurements are working fine & that the
> Angle appears to be working but just doesn't draw the
> value....I'll parse my full page more carefully and see if I can
> find where things are going wonky.....
>
> -Tom
>
>
> On Sat, Apr 19, 2008 at 12:10 PM, Bob Hanson <ha...@st...
> <mailto:ha...@st...>> wrote:
>
> I don't think so. It is measuring angles from the measure
> reports. And
> when I try these commands they work great. Try those commands
> from the
> Jmol console; I'm guessing something is still wrong with your
> JavaScript.
>
> Thomas Stout wrote:
>
> >
> > Hmmm. Thanks Bob -- That seemed like my obvious mistake, but
> > correcting it didn't seem to help. Here is the output from the
> > console history when I activate the Angle measuring versus
> Distance
> > measuring:
> >
> > set pickingStyle MEASURE;set picking MEASURE ANGLE;
> > measure (atomIndex=2097) (atomIndex=2100) (atomIndex=2099)
> > measure (atomIndex=2100) (atomIndex=2102) (atomIndex=2097)
> > measure (atomIndex=2097) (atomIndex=2096) (atomIndex=2095)
> > Script completed
> > Jmol script terminated
> > Script completed
> > Jmol script terminated
> > Atom #1:[086]1:Z.C15 #4211
> > Atom #2:[086]1:Z.N3 #4195
> > Distance [086]1:Z.C15 #4211 - [086]1:Z.N3 #4195 : 4.8738594
> > measureCompleted: [2, 2102, 2090, 4.87 Å]
> > Script completed
> > Jmol script terminated
> >
> > Jmol seems to actually not be measuring the angle, while it does
> > measure the Distance (or torsion). Am I still not properly
> activating
> > the Angle measurement somehow?
> >
> > Thank you very much,
> > Tom
> >
> > On Sat, Apr 19, 2008 at 4:58 AM, Bob Hanson
> <ha...@st... <mailto:ha...@st...>
> > <mailto:ha...@st... <mailto:ha...@st...>>> wrote:
> >
> > Tom, I think it's your links. The command is
> >
> > set pickingStyle MEASURE
> >
> > not
> >
> > set pickingStyle MEASURE ON
> >
> > Bob
> >
> > Thomas Stout wrote:
> >
> > >
> > > Hmmm.....is anyone else using interactive
> measurements? I've just
> > > added links to a web page to turn "on" and "off" the
> > measurements mode
> > > (so that someone could interactively measure
> > distances/angles/torsions
> > > of interest and then turn it off again). Distance and
> Torsions work
> > > just fine, but I find that Angles -- while displaying
> the dotted
> > lines
> > > of the two "arms" of the selected angle -- do not
> display the actual
> > > measurement (ie, 109.5 degrees). Here are my links:
> > >
> > > <a href="javascript:jmolScript('set picking MEASURE
> DISTANCE;set
> > > pickingStyle MEASURE ON;set measurements
> angstroms;');">Activate
> > > Distance Measuring</b></a> <a
> href="javascript:jmolScript('set
> > > pickingStyle MEASURE OFF;');">Off</a><br>
> > > <a href="javascript:jmolScript('set picking MEASURE
> ANGLE;set
> > > pickingStyle MEASURE ON;');"><b>Activate Angle
> Measuring</b></a> <a
> > > href="javascript:jmolScript('set pickingStyle MEASURE
> > OFF;');">Off</a><br>
> > > <a href="javascript:jmolScript('set picking MEASURE
> TORSION;set
> > > pickingStyle MEASURE ON;');"><b>Activate Torsion
> > Measuring</b></a> <a
> > > href="javascript:jmolScript('set pickingStyle MEASURE
> > OFF;');">Off</a><br>
> > >
> > > I'm using Jmol version 11.4.0 and the behavior is the
> same in IE6 on
> > > WindowsXP and in Firefox 2.0.0.4 <http://2.0.0.4>
> <http://2.0.0.4>
> > <http://2.0.0.4> on linux.
> > >
> > > Any thoughts about what I may be missing here?
> > > Thanks!
> > > -Tom
> > >
> >
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> >
> >
> > --
> > Robert M. Hanson
> > Professor of Chemistry
> > St. Olaf College
> > Northfield, MN
> > http://www.stolaf.edu/people/hansonr
> >
> >
> > If nature does not answer first what we want,
> > it is better to take what answer we get.
> >
> > -- Josiah Willard Gibbs, Lecture XXX, Monday, February
> 5, 1900
> >
> >
> >
> >
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>
> --
> Robert M. Hanson
> Professor of Chemistry
> St. Olaf College
> Northfield, MN
> http://www.stolaf.edu/people/hansonr
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>
>
>
> -------------------------------------------------------------------------
> This SF.net email is sponsored by the 2008 JavaOne(SM) Conference
> Don't miss this year's exciting event. There's still time to
> save $100.
> Use priority code J8TL2D2.
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>
>
>
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>
>
--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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