[Jmol-commits] SF.net SVN: jmol: [7978] branches/v11_2/Jmol/src/org/jmol/viewer/ JmolConstants.java

[<ha...@us...>]

Revision: 7978
          http://svn.sourceforge.net/jmol/?rev=7978&view=rev
Author:   hansonr
Date:     2007-07-23 03:04:10 -0700 (Mon, 23 Jul 2007)

Log Message:
-----------
11.2.5 bug fix for PDB remediated files with T/DT C5M/C7 difference

Modified Paths:
--------------
    branches/v11_2/Jmol/src/org/jmol/viewer/JmolConstants.java

Modified: branches/v11_2/Jmol/src/org/jmol/viewer/JmolConstants.java
===================================================================
--- branches/v11_2/Jmol/src/org/jmol/viewer/JmolConstants.java	2007-07-23 10:03:39 UTC (rev 7977)
+++ branches/v11_2/Jmol/src/org/jmol/viewer/JmolConstants.java	2007-07-23 10:04:10 UTC (rev 7978)
@@ -2090,6 +2090,8 @@
     "O4",  // 79 - base carbonyl O4, only in T and U
     "S4",  // 80 - base thiol sulfur, unique to thio-U
 
+    "C7", // 81 - base methyl carbon, unique to DT
+
   };
 
   public final static int ATOMID_MAX = specialAtomNames.length;
@@ -2437,7 +2439,7 @@
     "@g nucleic & within(group,_a=75)", // ATOMID_N2
     "@cg c,g",
     "@a nucleic & within(group,_a=76)", // ATOMID_N6
-    "@t nucleic & within(group,_a=77)", // ATOMID_C5M
+    "@t nucleic & within(group,_a=77 | _a=81)", // ATOMID_C5M or ATOMID_C7
     "@at a,t",
     "@i nucleic & within(group,_a=78) & !g", // ATOMID_O6
     "@u nucleic & within(group,_a=79) & !t", // ATOMID_O4


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