[Jmol-commits] SF.net SVN: jmol: [5904] trunk/Jmol/src/org/jmol/adapter/smarter/CifReader. java

[<ha...@us...>]

Revision: 5904
          http://svn.sourceforge.net/jmol/?rev=5904&view=rev
Author:   hansonr
Date:     2006-10-10 19:51:51 -0700 (Tue, 10 Oct 2006)

Log Message:
-----------
adds alternative location indications for organic/inorganic cif data
based on atom_site_disorder_group --- not perfect, but will work for now.

Modified Paths:
--------------
    trunk/Jmol/src/org/jmol/adapter/smarter/CifReader.java

Modified: trunk/Jmol/src/org/jmol/adapter/smarter/CifReader.java
===================================================================
--- trunk/Jmol/src/org/jmol/adapter/smarter/CifReader.java	2006-10-11 02:40:08 UTC (rev 5903)
+++ trunk/Jmol/src/org/jmol/adapter/smarter/CifReader.java	2006-10-11 02:51:51 UTC (rev 5904)
@@ -444,6 +444,7 @@
   final static byte GROUP_PDB = 16;
   final static byte MODEL_NO = 17;
   final static byte DUMMY_ATOM = 18;
+  final static byte DISORDER_GROUP = 19;
 
   final static String[] atomFields = { 
       "_atom_site_type_symbol",
@@ -465,6 +466,7 @@
       "_atom_site.group_PDB", 
       "_atom_site.pdbx_PDB_model_num",
       "_atom_site_calc_flag", 
+      "_atom_site_disorder_group",
   };
 
 
@@ -573,6 +575,7 @@
           atom.chainID = firstChar;
           break;
         case ALT_ID:
+        case DISORDER_GROUP: //not QUITE correct
           atom.alternateLocationID = field.charAt(0);
           break;
         case GROUP_PDB:


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