[Jmol-users] Motivated Proteins incorporates Jmol 11

[David L. <d.l...@bi...>]

Thought I'd post to say that I've finally updated our protein motif 
web facility with Jmol 11 (.1.36) using the new 'zoom (selected)' 
functionality and the perspective mode 11, and it seems to be working 
on all Mac browsers and Windows IE7. Anyone interested can see it at:

http://doolittle.ibls.gla.ac.uk/motif

Just choose from the ID lookup for an example protein, choose a motif 
(or pre-run with 'all' to find what's there) and select the 3D view. 
The single-motif alternative to the initial whole protein view uses 
the zoom (selected) to best effect (although it is now used for the 
whole protein and improves some which used to come up too small.) The 
reason this is so nice for me is that all the pages are generated 
programatically from a database, so I can never know how many atoms, 
residues, ligands etc I want to zoom to.

Thanks again to Bob and the rest of the team for Jmol 11. I incurred 
a few scars in the process of upgrading, but it was worth it in the 
end.

David

PS Any criticisms or suggestions regarding the web facility are welcomed.
-- 
_______________________________________________________________
  David P.Leader, Biochemistry and Molecular Biology
  Davidson Building, University of Glasgow, Glasgow G12 8QQ, UK
  Phone: +44 41 330-5905  http://doolittle.ibls.gla.ac.uk/leader
_______________________________________________________________