Re: [Jmol-developers] Isosurface and Color

[Einar C. <ein...@gm...>]

Yep, thanks for the answers. Previously I did what pim schravendijk(thanks
for the answer Pim) recommended. But since this is  event triggered, the
solution works but then is not very decent(you see the surfaces change from
translucent to opaque to translucent). I will try with the
translucent/opaque configuration and tell you what happens.

2007/8/5, Bob Hanson <ha...@st...>:
>
> Einar, the documentation is not very clear on this, and the coding logic
> may be questionable.
>
>   isosurface color XXXX
>
> only applies to isosurfaces such as MOs that have positive/negative
> phases. Since
>
>   isosurface "filename.cube"
>
> is not considered to be of that type, the color parameter in
>
>   isosurface color red "filename.cube'
>
> is ignored. Two options:
>
> 1) use the "opaque ..." format:
>
>   isosurface "filename.cube" opaque red
>
> 2) explicitly indicate phase for the isosurface:
>
>   isosurface phase color green "filename.cube"
>
> I suggest (1) rather than (2), because that gives you full control over
> translucency as well:
>
>   isosurface "filename.cube" translucent 0.3 red
>
> Bob
>
>
>
> Einar Coutin wrote:
>
> > Hello:
> >
> > In Jmol v 11.2.4 when I enter in the console the following command:
> >
> > isosurface COLOR red "../jmol/datos/moleculas/ch3cl-density.cub.gz";
> >
> > The isosurface is loaded with an ORANGE color instead of red. I want
> > to create the isosurface and give it the color I want in one sentence,
> >
> > Any help would be much appreciated.
> >
> >
> > Einar Cout=EDn.
> >
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>
> --
> Robert M. Hanson
> Professor of Chemistry
> St. Olaf College
> Northfield, MN
> http://www.stolaf.edu/people/hansonr
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>
>
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