Re: [Jmol-users] Jmol 10.9.86

[Frieda R. <fr...@ns...>]

On Oct 27, 2006, at 12:50 AM, ha...@st... wrote:

> I encourage all to try this out, particularly the zoom. take the  
> biggest,
> strangest PDB file you can and see what you can do with it.

Just working with a fairly big, about 7800 atoms, file, not that  
strange, but for what it's worth:

> Any problems?
> Like it?

No problems so far. The zoom level is phenomenal and I love it.

> Notice anything different? Too strange? Try it with "set
> windowcentered OFF; set picking center"

The rotation around the new center seems very good.

In this mode the zoom level re-adjusts suddenly when I pick a new  
center, which I see as a downside. I'd like/expect the zoom to stay  
the same when a new center is picked.

Also, clicking in the applet but not on an atom zooms the structure  
out. If you are already zoomed in, then I can see that this would be  
a convenient way to zoom out easily, but if you are doing this at a  
zoomed out level already, it seems odd. Not sure what to recommend  
here, just commenting.


> and start picking atoms and
> rotating the model; and with "set windowcentered ON" just to see  
> what that
> does differently.

This is fantastic.

> Zoom in and out to the extreme. You should be able to
> zoom to 200000, but I doubt you will ever ever need that.

Wow. This is absolutely terrific. I'll let you know what else I find  
(if anything) - this was a pretty quick set of tests with only one  
pdb file but I wanted to send some feedback quickly.

Wow.

Frieda



> I was playing
> with <http://www.rcsb.org/pdb/files/1d66.pdb>, myself.
>
> Bob
>
>
>> Hi,
>>
>> Jmol 10.9.86 is available for download at http://www.jmol.org/files/
>>
>> News:
>> - Turkish translation;
>> - draw, isosurface;
>> - new high zoom option allows nearly infinite zoom;
>> - fix minor selected/hidden bug
>>
>> Nico
>>
>>
>> --------------------------------------------------------------------- 
>> ----
>> Using Tomcat but need to do more? Need to support web services,  
>> security?
>> Get stuff done quickly with pre-integrated technology to make your  
>> job
>> easier
>> Download IBM WebSphere Application Server v.1.0.1 based on Apache  
>> Geronimo
>> http://sel.as-us.falkag.net/sel? 
>> cmd=lnk&kid=120709&bid=263057&dat=121642
>> _______________________________________________
>> Jmol-users mailing list
>> Jmo...@li...
>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>
>
>
>
> ---------------------------------------------------------------------- 
> ---
> Using Tomcat but need to do more? Need to support web services,  
> security?
> Get stuff done quickly with pre-integrated technology to make your  
> job easier
> Download IBM WebSphere Application Server v.1.0.1 based on Apache  
> Geronimo
> http://sel.as-us.falkag.net/sel? 
> cmd=lnk&kid=120709&bid=263057&dat=121642
> _______________________________________________
> Jmol-users mailing list
> Jmo...@li...
> https://lists.sourceforge.net/lists/listinfo/jmol-users

///////////////////////////////////////////

Frieda Reichsman, PhD
Molecules in Motion
Interactive Molecular Structures
http://www.moleculesinmotion.com

///////////////////////////////////////////