[Jmol-commits] CVS: Jmol/src/org/jmol/adapter/smarter PdbReader.java,1.24,1.25

[Miguel <mig...@us...>]

Update of /cvsroot/jmol/Jmol/src/org/jmol/adapter/smarter
In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv21530/src/org/jmol/adapter/smarter

Modified Files:
	PdbReader.java 
Log Message:
fixed hbond problem reported by jan in email of 20040830
hbonds inside .pdb files were not being treated properly


Index: PdbReader.java
===================================================================
RCS file: /cvsroot/jmol/Jmol/src/org/jmol/adapter/smarter/PdbReader.java,v
retrieving revision 1.24
retrieving revision 1.25
diff -u -r1.24 -r1.25
--- PdbReader.java	15 Jul 2004 14:36:53 -0000	1.24
+++ PdbReader.java	30 Aug 2004 18:12:33 -0000	1.25
@@ -275,8 +275,8 @@
             continue;
           }
         }
-        if (i >= 4)
-          logger.log("hbond:" + sourceIndex + "->" + targetIndex);
+        //        if (i >= 4)
+        //          logger.log("hbond:" + sourceIndex + "->" + targetIndex);
         model.addBond(new Bond(sourceIndex, targetIndex,
                                i < 4
                                ? 1 : ModelAdapter.ORDER_HBOND));