Re: [Jmol-developers] Initial .cube file isosurface support

[Park Won-K. <wk...@gm...>]

2005/7/17, Miguel <mi...@jm...>:
>=20
> > This is demo page for this cvs snapshot.
> >
> > http://chemie.skku.ac.kr/~wkpark/demos/demo/sample2.html
> >
> > Great!!
>=20
> Very nice.
>=20
> Comments/Questions:
>=20
> With 4 on one page it takes a while to load.
>=20
> 3 of the files are compressed ... but o2h2_1_06.cube is not. It would
> benefit from compression.
>
yes. That is just for testing

> I see that you are using a separate .pdb file to define the molecules. Yo=
u
> could use the .cube.gz files themselves, but performance would probably b=
e
> worse ... because the files would get downloaded twice.
>=20
> Q: Why are you using the signed applet?
>

because I want to use my small keylistener patch with the cut&paste feature=
.
( press "y" copy applet's image to the system clipboard then I need
signed applet.)

I use jmol applet almost all the time with my gaussian03 calculation
with small molecules :)
http://chemie.skku.ac.kr/jmol.html (you can use editor feature with
"alt- drag atom")

> Q: Why did you choose not to use the Jmol.js JavaScript library?
>
above jmol.html use some dirty javascript and I did not learn Jmol.js yet :=
p

>=20
> > and... is there any regenerate/replace or delete isosurface command ?
>=20
> If you use the same name in another isosurface command then the old one
> will be thrown away:
>=20
> isosurface plus 0.05 "file.cube"
> ...
> isosurface plus 0.01 "file.cube"
>=20
> You can also turn off a particular surface
>=20
>   isosurface plus off
>=20
> For fast response I think it is best if you load all the surfaces that yo=
u
> are going to use, with different names, and then then turn them on and
> off.
>

OK I understand

>=20
> Q: Is there any reason why someone would want to delete a surface instead
> of turning it off?
>

 the Chime support delete surfaces feature with it's control panel and
I ask about jmol on this feature.

but I just want to know how overwrite exist isosurface and now I learn
how to overwrite it.


>=20
> Miguel