From: Miguel <mig...@us...> - 2004-06-03 21:52:58
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Update of /cvsroot/jmol/Jmol/src/org/openscience/jmol/viewer In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv21151/src/org/openscience/jmol/viewer Modified Files: JmolConstants.java Log Message: prime is now supported along with star Index: JmolConstants.java =================================================================== RCS file: /cvsroot/jmol/Jmol/src/org/openscience/jmol/viewer/JmolConstants.java,v retrieving revision 1.137 retrieving revision 1.138 diff -u -r1.137 -r1.138 --- JmolConstants.java 3 Jun 2004 17:51:27 -0000 1.137 +++ JmolConstants.java 3 Jun 2004 21:52:49 -0000 1.138 @@ -1539,13 +1539,13 @@ // nucleic acid backbone sugar // - "O5*", // 5 - sugar 5' oxygen - "C5*", // 6 - sugar 5' carbon - "C4*", // 7 - sugar ring 4' carbon - "C3*", // 8 - sugar ring 3' carbon - "O3*", // 9 - sugar 3' oxygen - "C2*", // 10 - sugar ring 2' carbon - "C1*", // 11 - sugar ring 1' carbon + "O5'", // 5 - sugar 5' oxygen + "C5'", // 6 - sugar 5' carbon + "C4'", // 7 - sugar ring 4' carbon + "C3'", // 8 - sugar ring 3' carbon + "O3'", // 9 - sugar 3' oxygen + "C2'", // 10 - sugar ring 2' carbon + "C1'", // 11 - sugar ring 1' carbon // reserved for future expansion ... lipids & carbohydrates null, null, null, null, // 12 - 15 @@ -1588,19 +1588,19 @@ "O2P", // 49 - second equivalent oxygen on phosphorus of phosphate - "O4*", // 50 - sugar ring 4' oxygen ... not present in +T ... maybe others - "O2*", // 51 - sugar 2' oxygen, unique to RNA + "O4'", // 50 - sugar ring 4' oxygen ... not present in +T ... maybe others + "O2'", // 51 - sugar 2' oxygen, unique to RNA // nucleic acid backbone hydrogens // - "1H5*", // 52 - first equivalent H on sugar 5' carbon - "2H5*", // 53 - second equivalent H on sugar 5' carbon - "H4*", // 54 - H on sugar ring 4' carbon - "H3*", // 55 - H on sugar ring 3' carbon - "1H2*", // 56 - first equivalent H on sugar ring 2' carbon - "2H2*", // 57 - second equivalent H on sugar ring 2' carbon - "2HO*", // 58 - H on sugar 2' oxygen, unique to RNA - "H1*", // 59 - H on sugar ring 1' carbon + "1H5'", // 52 - first equivalent H on sugar 5' carbon + "2H5'", // 53 - second equivalent H on sugar 5' carbon + "H4'", // 54 - H on sugar ring 4' carbon + "H3'", // 55 - H on sugar ring 3' carbon + "1H2'", // 56 - first equivalent H on sugar ring 2' carbon + "2H2'", // 57 - second equivalent H on sugar ring 2' carbon + "2HO'", // 58 - H on sugar 2' oxygen, unique to RNA + "H1'", // 59 - H on sugar ring 1' carbon // "H3T", // 60 - 3' terminus hydrogen // |