From: <rka...@ri...> - 2004-10-18 15:41:57
|
Interesting question. One could argue that they are not important, but they do give a sense=20 of how well the calculation converges to the optimized geometry. My=20 idea was that since the information is in the output, the user should=20 be able to visualize it and it should not be skipped a priori. As I=20 mentioned earlier, that could go against the general idea of what Jmol=20= should be doing. If that is the case, I can live with it. The thing is that in the end I will still end up with possibly a whole=20= lot of models coming in from a single file so a way to pick which model=20= one wants to see would need to be found, which makes the issue of=20 reading more models than strictly needed (in that particular case) be=20 less of a problem from the user's perspective. Ren=E9 PS I am still working on the NWChem output file description. That's=20 going to be a long message, so it'll take me a while longer :-) On Oct 18, 2004, at 11:06 AM, Miguel wrote: > >>> Q: What are the other three intermediate ones for? >> The three intermediate ones are the results of 'steps' in the = geometry >> optimization, where based on forces on the atoms the nuclear >> arrangement is modified in order to find the arrangement where the >> energy is the lowest (and the forces are zero). >> The force is proportional to energy gradients [dE/dx, dE/dy, dE/dz]=20= >> for >> each x,y,z of each atom if one looks at it as a cartesian space >> optimization. My input actually requested to keep the internal=20 >> z-matrix >> as the space to take the derivatives, reducing the number of spatial >> dimensions to optimize, which can have benefits. > > If they are just intermediate steps, what are they good for? > > Miguel > > > > ------------------------------------------------------- > This SF.net email is sponsored by: IT Product Guide on=20 > ITManagersJournal > Use IT products in your business? Tell us what you think of them. Give=20= > us > Your Opinions, Get Free ThinkGeek Gift Certificates! Click to find out=20= > more > http://productguide.itmanagersjournal.com/guidepromo.tmpl > _______________________________________________ > Jmol-developers mailing list > Jmo...@li... > https://lists.sourceforge.net/lists/listinfo/jmol-developers > |