Re: [Jmol-developers] [ jmol-Bugs-1007897 ] color absolute temperature

[Miguel <mi...@jm...>]

> documentation updated. How's this?
>
> See
>
> http://www.stolaf.edu/people/hansonr/jmol/docs/?search=temperature
>
> color [temperature-mode]
>
> Color atoms based on an absolute "temperature" scale from blue ("cold",
> less
> motion) to red ("hot", more motion) or using a relative "temperature"
> scale from
> blue ("coldest", least motion) to red ("hottest", most motion). This
> presumes
> crystallographic B-factor information.
>
> where
>
>    [temperature-mode]	is "fixedTemperature" or "relativeTemperature"
>
> I think that's what we're talking about.

Essentially yes

color {object} temperature

Is RasMol/Chime compatible. The range is scaled to the min/max values that
actually occur in the model. There is a difference from RasMol/Chime. The
neutral color in RasMol/Chime is green. So RasMol/Chime go
blue->green->red. Jmol goes blue->white->red

"relativeTemperature" is an alias for "temperature".

Q: Do you prefer 'scaledTemperature' instead of 'relativeTemperature'?

color {object} fixedTemperature

Will color things on an absolute scale from 0 to 100. 0 is always full
blue. 50 is white 100 is full red.


Miguel