#583 Compressed zip files are not loaded correctly - jmol-14.6.0

[Ilya M]

In jmol-14.6.0_2016.06.30

Jsmol

included files: only JSmol.min.js

code:

            var Info = {
              width: 450,
              height: 450,
              debug: false,
              color: "white",
              addSelectionOptions: false,
              use: "HTML5",
              j2sPath: "/j2s",
              readyFunction: jmolReady,
              src: '/data/2bxaH.pdb.zip',

"JmolApplet.jar"),

              disableInitialConsole: false

            }

Jmol._binaryTypes.push('');
jmolApplet0 = Jmol.getApplet("jmolApplet0", Info);

Big pdb file packed with the zip algorithm generates error:

In Chrome: script ERROR: RangeError: Maximum call stack size exceeded
In Firefox: script ERROR: RangeError: arguments array passed to Function.prototype.apply is too large

Compression with the Gzip ".gz" is ok.

Thanks.
Ilya.

[Ilya M]

2bxaH file is included in downloadable distribution of Jmol

[Ilya M]

Code fix:

       var Info = {
          width: 450,
          height: 450,
          debug: false,
          color: "white",
          addSelectionOptions: false,
          use: "HTML5",
          j2sPath: "/j2s",
          readyFunction: jmolReady,
          src: '/data/2bxaH.pdb.zip',
          disableInitialConsole: false

        }

Jmol._binaryTypes.push('');
jmolApplet0 = Jmol.getApplet("jmolApplet0", Info);

[Bob Hanson]

So, what was the fix?

On Tue, Jul 12, 2016 at 5:20 AM, Ilya M vorpaltech@users.sf.net wrote:

Code fix:

   var Info = {
      width: 450,
      height: 450,
      debug: false,
      color: "white",
      addSelectionOptions: false,
      use: "HTML5",
      j2sPath: "/j2s",
      readyFunction: jmolReady,
      src: '/data/2bxaH.pdb.zip',
      disableInitialConsole: false

    }

Jmol._binaryTypes.push('');
jmolApplet0 = Jmol.getApplet("jmolApplet0", Info);

---

• [bugs:#583] https://sourceforge.net/p/jmol/bugs/583/ Compressed zip
  files are not loaded correctly - jmol-14.6.0*

Status: open
Group: v12
Created: Tue Jul 12, 2016 10:18 AM UTC by Ilya M
Last Updated: Tue Jul 12, 2016 10:19 AM UTC
Owner: nobody

In jmol-14.6.0_2016.06.30

Jsmol

included files: only JSmol.min.js

code:

        var Info = {
          width: 450,
          height: 450,
          debug: false,
          color: "white",
          addSelectionOptions: false,
          use: "HTML5",
          j2sPath: "/j2s",
          readyFunction: jmolReady,
          src: '/data/2bxaH.pdb.zip',

"JmolApplet.jar"),

          disableInitialConsole: false

        }

Jmol._binaryTypes.push('');
jmolApplet0 = Jmol.getApplet("jmolApplet0", Info);

Big pdb file packed with the zip algorithm generates error:

In Chrome: script ERROR: RangeError: Maximum call stack size exceeded
In Firefox: script ERROR: RangeError: arguments array passed to
Function.prototype.apply is too large

Compression with the Gzip ".gz" is ok.

Thanks.
Ilya.

---

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--
Robert M. Hanson
Larson-Anderson Professor of Chemistry
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr

If nature does not answer first what we want,
it is better to take what answer we get.

-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900

[Angel Herraez]

Hello, Ilya
I took that pdb file from the 14.6.0_2016.06.30 distribution, compressed it using WinZip and loaded into Jmol: no errors

There might be something in particular with your compression method.

[Ilya M]

Hi All
Sorry for delay.

-- So, what was the fix?

It was just amendment of code to reproduce the issue.

-- Hello, Ilya
-- I took that pdb file from the 14.6.0_2016.06.30 distribution, compressed it using WinZip and loaded into Jmol: no errors

-- There might be something in particular with your compression method.

Yes, it might be. I am using linux zip command and output of java ZipOutputStream. Version which causes error attached.

Thanks.