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#546 show pdbheader freezes Jmol 13.1.12

closed-fixed
nobody
None
5
2013-02-18
2013-02-15
Rolf Huehne
No

When I run the command "show pdbheader" in Jmol 13.1.12 () after loading a PDB entry file it freezes (applet and application) with the following error message:
QueueThread0_55 exception java.lang.ArrayIndexOutOfBoundsException: -1

System: OpenSuse 11.4, JRE version 1.6.0_37-b06 Java HotSpot(TM) 64-Bit Server VM

Discussion

  • Bob Hanson

    Bob Hanson - 2013-02-15

    please try http://chemapps.stolaf.edu/jmol/Jmol-13.zip
    and let me know if the problem persists. If so, I'll need to know the PDB ID or get the offending file itself.

     
  • Rolf Huehne

    Rolf Huehne - 2013-02-18

    Thanks Bob, it works with the new version.

    I didn't expect a dependency on a specific file, because the command worked with the same file in an SVN build of 13.1.10 and I wasn't really aware of the file modification (see below).
    The file is the asymmetric unit file of PDB entry 1DEH, with 4 small extra models inserted before the 'MASTER' line:
    http://jenalib.fli-leibniz.de/cgi-bin/idb_send.pl?CODE=1deh&MODE=complete-asymmetricSNP-DIFFRACTION&MIME=HTML

     
  • Bob Hanson

    Bob Hanson - 2013-02-18
    • status: open --> closed-fixed
     

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