From: SourceForge.net <no...@so...> - 2005-11-18 12:22:11
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Bugs item #1211611, was opened at 2005-05-30 23:29 Message generated for change (Settings changed) made by shk3 You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=110084&aid=1211611&group_id=10084 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: None Group: None >Status: Closed Resolution: None Priority: 5 Submitted By: Bala (balubk) Assigned to: Stefan Kuhn (shk3) Summary: JCP doesn't display stereo bonds properly Initial Comment: This is somewhat similar to the a bug submitted earlier. The attached file snapshot1.png shows the image of the molecule as I was drawing it. I saved it as CML file and reopened it. The JCP rendering of the CML file is shown in snapshot2.png. I have attached the CML file also. The CML file seems to be correct. Also, JCP is calculating the molecular formula wrong. It is not taking into account the implicit hydrogens. This can be seen in the status bar of the snapshots. ---------------------------------------------------------------------- Comment By: Stefan Kuhn (shk3) Date: 2005-10-12 18:45 Message: Logged In: YES user_id=452972 About formula: Did you switch on implicit hydrogens before? Because by default jcp does not use them. If we take them into account by default, the "add implicit hydrogens" does not make sense. The formula without implicit Hs is therefore not a bug, but a feature. ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=110084&aid=1211611&group_id=10084 |