[Java-ML-support] MCL

[Rafael J. <ra...@eb...>]

Hello,

I am looking for some help. I am using MCL to group protein interactions.
MCL helps me to get a better graphical representation of interactions. Here
some examples ...

http://www.heartproteome.org/copa/interactome_mouse_proteasome.aspx
http://www.heartproteome.org/copa/interactome_human_mitochondria.aspx

So far I am using the MCL command line tool in the simplest way ...

mcl input.txt --abc -o output.txt

This is an input example ...

Prot.A Prot.B Score
P37173 P07200 0.5248886
Q9Y6C2 P07200 0.40116468
Q15750 Q15750 0.40116468
...

All my code is in Java and I would like to be more independent of the
command line, is there a way to do the same thing with Java-ML?

Thanks in advance for your help,
Regards,
Rafael.