Iris Calliope

2-photon scanning software

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Commit [r868]  Maximize  Restore  History

first commit of min1pipe ( https://github.com/JinghaoLu/MIN1PIPE ), min1pipe_interface (scripts to interact with min1pipe from calliope) and caiman_interface

Authored by: dororoma 2021-12-17

Browse code at this revision

Parent: [r867]

Child: [r869]

1 2 3 .. 7 > >> (Page 1 of 7)

added	/Plugins/caiman_interface
added	/Plugins/caiman_interface/caiman_pipeline.m
added	/Plugins/caiman_interface/caiman_roi_neurons.m
added	/Plugins/caiman_interface/memmap_file_calliope.m
added	/Plugins/min1pipe
added	/Plugins/min1pipe/LICENSE.txt
added	/Plugins/min1pipe/README.md
added	/Plugins/min1pipe/demo_min1pipe.m
added	/Plugins/min1pipe/demo_min1pipe_HPC.m
added	/Plugins/min1pipe/min1pipe.m
added	/Plugins/min1pipe/min1pipe_HPC.m
added	/Plugins/min1pipe/min1pipe_old.m
added	/Plugins/min1pipe/utilities
added	/Plugins/min1pipe/utilities/CNMF
added	/Plugins/min1pipe/utilities/CNMF/CNMFSetParms.m
added	/Plugins/min1pipe/utilities/CNMF/constrained_foopsi.m
added	/Plugins/min1pipe/utilities/CNMF/cvx_foopsi.m
added	/Plugins/min1pipe/utilities/CNMF/find_unsaturatedPixels.m
added	/Plugins/min1pipe/utilities/CNMF/get_noise_fft.m
added	/Plugins/min1pipe/utilities/CNMF/init_roi.m
added	/Plugins/min1pipe/utilities/CNMF/kmeans_pp.m
added	/Plugins/min1pipe/utilities/CNMF/lars_regression_noise.m
added	/Plugins/min1pipe/utilities/CNMF/preprocess_data.m
added	/Plugins/min1pipe/utilities/CNMF/update_order.m
added	/Plugins/min1pipe/utilities/RNN

/Plugins/caiman_interface

Directory.

/Plugins/caiman_interface/caiman_pipeline.m Diff Switch to side-by-side view

/Plugins/caiman_interface/caiman_roi_neurons.m Diff Switch to side-by-side view

/Plugins/caiman_interface/memmap_file_calliope.m Diff Switch to side-by-side view

/Plugins/min1pipe

Directory.

/Plugins/min1pipe/LICENSE.txt Diff Switch to side-by-side view

/Plugins/min1pipe/README.md Diff Switch to side-by-side view

/Plugins/min1pipe/demo_min1pipe.m Diff Switch to side-by-side view

/Plugins/min1pipe/demo_min1pipe_HPC.m Diff Switch to side-by-side view

/Plugins/min1pipe/min1pipe.m Diff Switch to side-by-side view

/Plugins/min1pipe/min1pipe_HPC.m Diff Switch to side-by-side view

/Plugins/min1pipe/min1pipe_old.m Diff Switch to side-by-side view

/Plugins/min1pipe/utilities

Directory.

/Plugins/min1pipe/utilities/CNMF

Directory.

/Plugins/min1pipe/utilities/CNMF/CNMFSetParms.m Diff Switch to side-by-side view

/Plugins/min1pipe/utilities/CNMF/constrained_foopsi.m Diff Switch to side-by-side view

/Plugins/min1pipe/utilities/CNMF/cvx_foopsi.m Diff Switch to side-by-side view

/Plugins/min1pipe/utilities/CNMF/find_unsaturatedPixels.m Diff Switch to side-by-side view

/Plugins/min1pipe/utilities/CNMF/get_noise_fft.m Diff Switch to side-by-side view

/Plugins/min1pipe/utilities/CNMF/init_roi.m Diff Switch to side-by-side view

/Plugins/min1pipe/utilities/CNMF/kmeans_pp.m Diff Switch to side-by-side view

/Plugins/min1pipe/utilities/CNMF/lars_regression_noise.m Diff Switch to side-by-side view

/Plugins/min1pipe/utilities/CNMF/preprocess_data.m Diff Switch to side-by-side view

/Plugins/min1pipe/utilities/CNMF/update_order.m Diff Switch to side-by-side view

/Plugins/min1pipe/utilities/RNN

Directory.

1 2 3 .. 7 > >> (Page 1 of 7)

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