GeneControl GUI

This gives an overview how to run the GeneControl GUI.
For more details about the data formats look at the corresponding wiki page: [Input Formats]

Resources

• UCSC/Ensembl Genes table file
  • Indicate a file with the reference gene annotations in USCS table format you like to control (UCSC or Ensembl genes are currently supported)
• UCSC/Ensembl Amino Acid Sequences table file
  • Indicate a file with reference amino acid sequences corresponding to the gene annotations file in USCS table format
• Reference chromosomes path
  • Indicate the path with the reference chromosome

Options

• Minimal similarity
  • Define the desired minimum similarity between reference amino acid sequences and self translated sequences (Please note, comparisons of sequences with different lengths will result in a similarity of zero)

Execution

• Start
  • Run the control by pressing the Start-button

Configuration

• Load
  • Load a configuration file to import the parameters for Resources, Output and Options
• Save
  • Save a configuration file to keep the selected Resources, Output and Options