iPiG targets the integration of peptide spectrum matches (PSMs) from mass spectrometry (MS)
peptide identifications into genomic visualisations provided by genome browser such as the UCSC genome browser (http://genome.ucsc.edu/).

iPiG takes PSMs from the MS standard format mzIdentML (*.mzid) or in text format and provides results in genome track formats (BED and GFF3 files), which can be easily imported into genome browsers.

For more details about iPiG and it's functionallity, please see

"iPiG: Integrating Peptide Spectrum Matches Into Genome Browser Visualizations"
Mathias Kuhring and Bernhard Y. Renard
(http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0050246)

Project Samples

Project Activity

See All Activity >

Categories

Bio-Informatics

License

BSD License

Follow iPiG

iPiG Web Site

Other Useful Business Software
$300 Free Credits for Your Google Cloud Projects Icon
$300 Free Credits for Your Google Cloud Projects

Start building on Google Cloud with $300 in free credits. No commitment, no credit card required until you're ready to scale.

Launch your next project with $300 in free Google Cloud credits—no strings attached. Test, build, and deploy without risk. Use your credits across the entire Google Cloud platform to find what works best for your needs. After your credits are used, continue with always-free tier services. Only pay when you're ready to scale. Sign up in minutes and start exploring.
Start Free Trial
Rate This Project
Login To Rate This Project

User Reviews

Be the first to post a review of iPiG!

Additional Project Details

Languages

English

Intended Audience

Science/Research

User Interface

Console/Terminal, Java Swing

Programming Language

Java

Related Categories

Java Bio-Informatics Software

Registered

2012-03-13