invade codenew

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Commit [r7] Maximize Restore History

branch with ref sites ready

Authored by: rokofler 2019-01-28

Browse code at this revision

Parent: [r6]

Child: [r8]

added	/src/META-INF
added	/src/META-INF/MANIFEST.MF
changed	/src/branches/clupossel/inv/Main.java
changed	/src/branches/clupossel/inv/corelib/Population.java
changed	/src/branches/clupossel/inv/corelib/fitness/FitnessFunction_AllInsertions.java
changed	/src/branches/clupossel/inv/corelib/genome/DiploidGenome.java
changed	/src/branches/clupossel/inv/corelib/genome/GenomicInterval.java
changed	/src/branches/clupossel/inv/corelib/genome/HaploidGenome.java
changed	/src/branches/clupossel/inv/corelib/io/output/SFSWriter.java
changed	/src/branches/clupossel/inv/corelib/io/parser/BasepopLoader.java
copied	/src/branches/clupossel/inv/corelib/io/parser/ClusterDefinitionParser.java -> /src/branches/clupossel/inv/corelib/io/parser/RefsiteDefinitionParser.java
changed	/src/branches/clupossel/inv/corelib/statistic/PopulationStatisticCalculator.java
changed	/src/branches/clupossel/inv/corelib/statistic/SpecimenSummary.java
changed	/src/branches/clupossel/inv/corelib/statistic/SpecimenSummaryBuilder.java
changed	/src/branches/clupossel/inv/invasion/InvasionComandLineParser.java
changed	/src/branches/clupossel/inv/invasion/InvasionSimulationFramework.java
changed	/src/branches/clupossel/inv/unittest/testcases/genome/Test_HaploidGenome.java
changed	/src/branches/clupossel/inv/unittest/testcases/genome/Test_HaploidGenome_Recombine.java
changed	/src/branches/clupossel/inv/unittest/testcases/genome/Test_HaploidGenome_RecombineAndJump.java

/src/META-INF

Directory.

/src/META-INF/MANIFEST.MF Diff Switch to side-by-side view

/src/branches/clupossel/inv/Main.java Diff Switch to side-by-side view

/src/branches/clupossel/inv/corelib/Population.java Diff Switch to side-by-side view

/src/branches/clupossel/inv/corelib/fitness/FitnessFunction_AllInsertions.java Diff Switch to side-by-side view

/src/branches/clupossel/inv/corelib/genome/DiploidGenome.java Diff Switch to side-by-side view

/src/branches/clupossel/inv/corelib/genome/GenomicInterval.java Diff Switch to side-by-side view

/src/branches/clupossel/inv/corelib/genome/HaploidGenome.java Diff Switch to side-by-side view

/src/branches/clupossel/inv/corelib/io/output/SFSWriter.java Diff Switch to side-by-side view

/src/branches/clupossel/inv/corelib/io/parser/BasepopLoader.java Diff Switch to side-by-side view

/src/branches/clupossel/inv/corelib/io/parser/ClusterDefinitionParser.java to /src/branches/clupossel/inv/corelib/io/parser/RefsiteDefinitionParser.java

File was copied.

/src/branches/clupossel/inv/corelib/statistic/PopulationStatisticCalculator.java Diff Switch to side-by-side view

/src/branches/clupossel/inv/corelib/statistic/SpecimenSummary.java Diff Switch to side-by-side view

/src/branches/clupossel/inv/corelib/statistic/SpecimenSummaryBuilder.java Diff Switch to side-by-side view

/src/branches/clupossel/inv/invasion/InvasionComandLineParser.java Diff Switch to side-by-side view

/src/branches/clupossel/inv/invasion/InvasionSimulationFramework.java Diff Switch to side-by-side view

/src/branches/clupossel/inv/unittest/testcases/genome/Test_HaploidGenome.java Diff Switch to side-by-side view

/src/branches/clupossel/inv/unittest/testcases/genome/Test_HaploidGenome_Recombine.java Diff Switch to side-by-side view

/src/branches/clupossel/inv/unittest/testcases/genome/Test_HaploidGenome_RecombineAndJump.java Diff Switch to side-by-side view