IndelExtractor

IndelExtractor is a GUI and command-line application written in Perl that generates various molecular sequence alignment masks, including one to make identification and removal of Indels and their surrounding ambiguous alignment quick and simple.

Project Samples

Full screen view showing seq and alignment pane with masks

Aligned Sequences pane on Windows, partial sequences in blue

BLAST results page with settings in the preferences

Project Activity

See All Activity >

License

GNU General Public License version 2.0 (GPLv2)

Follow IndelExtractor

IndelExtractor Web Site

Other Useful Business Software

Enterprise-grade ITSM, for every business

Give your IT, operations, and business teams the ability to deliver exceptional services—without the complexity.

Freshservice is an intuitive, AI-powered platform that helps IT, operations, and business teams deliver exceptional service without the usual complexity. Automate repetitive tasks, resolve issues faster, and provide seamless support across the organization. From managing incidents and assets to driving smarter decisions, Freshservice makes it easy to stay efficient and scale with confidence.

Try it Free

Rate This Project

User Reviews

Be the first to post a review of IndelExtractor!

Additional Project Details

Operating Systems

Linux, BSD, Windows

Intended Audience

Science/Research

Programming Language

Perl

Related Categories

Perl Molecular Science Software, Perl Bio-Informatics Software

Registered

2005-01-13

Similar Business Software

MEGA

MEGA (Molecular Evolutionary Genetics Analysis) is a powerful and user-friendly software suite designed for analyzing DNA and protein sequence data from species and populations. It facilitates both automatic and manual sequence alignment, phylogenetic tree inference, and evolutionary hypothesis...

See Software
HyperProtein

HyperProtein is Hypercube, Inc.'s new product focusing on the computational science associated with protein sequences. The product includes the analysis of one-dimensional protein sequences as well as the analysis of consequent three-dimensional protein structures. In particular, the...

See Software
Genome Analysis Toolkit (GATK)

Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. The GATK...

See Software