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Tree [74ea06] master / History
| File | Date | Author | Commit |
|---|---|---|---|
| db | 2016-12-13 |
Igor Mandric
|
[f979f3] moved human |
| example | 2016-11-30 |
Igor Mandric
|
[1a44ca] example |
| README.md | 2016-11-21 |
Igor
|
[81091b] Update README.md |
| cast.py | 2016-11-25 |
Igor Mandric
|
[927a4d] extended output |
| imrep.py | 2017-01-07 |
Igor Mandric
|
[74ea06] changed options imrep |
| imrep2.py | 2016-11-06 |
Igor Mandric
|
[40ab19] all chains |
| imrep3.py | 2016-11-18 |
Igor Mandric
|
[1161ab] clean-up |
| search.py | 2016-10-31 |
Igor Mandric
|
[852845] First commit |
| utils.py | 2016-12-25 |
Igor Mandric
|
[b1e812] more detailed info in debug files |
Read Me
ImReP
ImReP is a tool written in Python programming language (version 2.7) which is designed to assemble CDR3 region sequences from RNA- or TCR-(BCR-)-Seq reads (either single- or paired-end) and provide immune repertoire as a set of clonotypes with their counts.
Please do not hesitate to contact us (imandric1@student.gsu.edu, smangul@ucla.edu) if you have any comments, suggestions, or clarification requests regarding the tutorial or if you would like to contribute to this resource.
