DownloadImagingAnalysis is a Mathematica package that performs grid-based analysis of time-lapse imaging data saved in a sequence of TIFF files. This package requires Mathematica 7.0.
Revised on 14 May 2017: Bugs are fixed and incompatibility issues are resolved. The current version runs on Mathematica 11.
Features
- Extracts time series from individual grids (cells) and plots in various formats
- Detects peak positions and plot them as raster plots and histograms
- Displays spatial distribution of oscillatory parameters, e.g. period
- Estimates period using three independent measures (FFT/peak-peak/unwrapping)
- Extracts time-dependent phases by using dimensional embedding
- Detrends and normalizes raw time series
- Reconstruct time-lapse images using normalized oscillations
- Find clusters using spectral clustering and partial correlations
- Calculates time-dependent phase coherence by Kuramoto Synchronization Index
- Performs phase unwrapping
- Animates phase development in a clock-like format
Project Samples
License
Academic Free License (AFL)Follow ImagingAnalysis
You Might Also Like
Stay productive working at any distance from anywhere with Monitask.
Rate This Project
Login To Rate This Project
User Reviews
Be the first to post a review of ImagingAnalysis!