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#4 impossible to run im_browser

Started
nobody
None
2018-11-13
2016-01-08
No

Dear Experts,

I tried to instal the Image Browser on my OS X system with Matlab R2015. Initially I was able to set it up and running and to test some of the features... But then when I want to see my model within FIJI I was aske to update java (or soemthing like this) and then restart the Matlab. Once I did this, I can not run im_browser anymore.

When I open Matlab I am getting whole bunche of error messages (never happend before):

Exception in thread "Startup Class Loader" java.lang.NoSuchMethodError: javax.media.opengl.GLDrawableFactory.initSingleton()V
at javax.media.opengl.GLProfile.initProfilesForDefaultDevices(GLProfile.java:1713)
at javax.media.opengl.GLProfile.access$000(GLProfile.java:77)
at javax.media.opengl.GLProfile$1.run(GLProfile.java:201)
at java.security.AccessController.doPrivileged(Native Method)
at javax.media.opengl.GLProfile.initSingleton(GLProfile.java:187)
at com.mathworks.hg.peer.JavaSceneServerPeer.initializeJOGL(JavaSceneServerPeer.java:134)
at com.mathworks.hg.peer.JavaSceneServerPeer.<clinit>(JavaSceneServerPeer.java:104)
at java.lang.Class.forName0(Native Method)
at java.lang.Class.forName(Class.java:190)
at com.mathworks.mde.desk.StartupClassLoader.loadClass(StartupClassLoader.java:258)
at com.mathworks.mde.desk.StartupClassLoader.access$900(StartupClassLoader.java:25)
at com.mathworks.mde.desk.StartupClassLoader$2.run(StartupClassLoader.java:244)
at java.lang.Thread.run(Thread.java:745)

And if try to run im_browser I getting these:

im_browser
Caught unexpected exception of unknown type.
im_browser
Error using hgload>localCheckRecursion (line 145)
File /Users/bohumil/Documents/im_browser/im_browser.fig recursively loaded itself.

Error in hgload (line 43)

Error in matlab.hg.internal.openfigLegacy (line 57)
[fig, savedvisible] = hgload(filename, struct('Visible','off'));

Error in gui_mainfcn>local_openfig (line 286)
gui_hFigure = matlab.hg.internal.openfigLegacy(name, singleton, visible);

Error in gui_mainfcn (line 158)
gui_hFigure = local_openfig(gui_State.gui_Name, gui_SingletonOpt,
gui_Visible);

Error in im_browser (line 60)
gui_mainfcn(gui_State, varargin{:});

And if I exit Matlab after previous error messages, I'm getting this (see attached image) plus this:

MATLAB crash file:/Users/bohumil/matlab_crash_dump.4790-1:


   Segmentation violation detected at Fri Jan  8 09:59:53 2016

Configuration:
Crash Decoding : Disabled
Crash Mode : continue (default)
Current Graphics Driver: Unknown hardware
Current Visual : Quartz
Default Encoding : US-ASCII
Host Name : tsf-444-wpa-4-203.epfl.ch
MATLAB Architecture : maci64
MATLAB Root : /Applications/MATLAB85i/MATLAB_R2015a.app
MATLAB Version : 8.5.0.197613 (R2015a)
OpenGL : hardware
Operating System : Darwin 14.5.0 Darwin Kernel Version 14.5.0: Tue Sep 1 21:23:09 PDT 2015; root:xnu-2782.50.1~1/RELEASE_X86_64 x86_64
Processor ID : x86 Family 6 Model 42 Stepping 7, GenuineIntel
Virtual Machine : Java 1.7.0_60-b19 with Oracle Corporation Java HotSpot(TM) 64-Bit Server VM mixed mode
Window System : Quartz

Fault Count: 1

Abnormal termination:
Segmentation violation

Register State (from fault):
RAX = 000000011d4ab630 RBX = 0000000114ce1f40
RCX = 000000011d4ab698 RDX = 00007f8bf5a55171
RSP = 0000000000000000 RBP = 0000000000000000
RSI = 0000000114ee61e6 RDI = 000000011d4ab650

R8 = 000000011d4ab6f0 R9 = 0000000114efb81b
R10 = 000000011d4ab670 R11 = 0000000114b21759
R12 = 000000011d4ab680 R13 = 0000000114b27aa9
R14 = 00007f8bf5b00340 R15 = 00007f8bf5b00350

RIP = 000000011d4ab6d0 RFL = 0000000115261bf8

CS = 00007f8bf5b00500 FS = 00007f8bf5a55171 GS = 0000000114fb1040

Stack Trace (from fault):
[ 0] 0x000000010ff30964 /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwfl.dylib+00031076 ZN2fl4diag15stacktrace_base7captureERKNS0_14thread_contextEm+00000052
[ 1] 0x000000010ff3402b /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwfl.dylib+00045099 _ZN2fl4test17terminate_handledEv+00000763
[ 2] 0x000000010ff33ac7 /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwfl.dylib+00043719 _ZN2fl4diag13terminate_logEPKcPK17darwin_ucontext+00000119
[ 3] 0x000000010fa60f9b /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwmcr.dylib+00380827 Z32mnRunPathDependentInitializationv+00002875
[ 4] 0x000000010fa61217 /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwmcr.dylib+00381463 _Z32mnRunPathDependentInitializationv+00003511
[ 5] 0x000000010fa5f3a6 /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwmcr.dylib+00373670 mnFatalSignalHandler+00000262
[ 6] 0x00007fff84e0af1a /usr/lib/system/libsystem_platform.dylib+00020250 _sigtramp+00000026
[ 7] 0x0000000116ce0e00 <unknown-module>+00000000
[ 8] 0x0000000115261bf8 /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwm_interpreter.dylib+03984376 _ZN12InterpBridge22ClearArraysInDesiredWSEP15inWorkSpace_tag+00000280
[ 9] 0x0000000115261e55 /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwm_interpreter.dylib+03984981 _Z33inClearArraysInCurrentAndGlobalWSPFP15inWorkSpace_tagiE+00000021
[ 10] 0x0000000114f904e3 /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwm_interpreter.dylib+01029347 _ZN12InterpBridge12FullClearFcnEiPP11mxArray_tagiS2
+00002707
[ 11] 0x0000000114f8ffd1 /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwm_interpreter.dylib+01028049 ZN12InterpBridge12FullClearFcnEiPP11mxArray_tagiS2+00001409
[ 12] 0x0000000114bd6936 /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwm_dispatcher.dylib+00117046 ZN11Mfh_builtin11dispatch_mfEiPP11mxArray_tagiS2+00000086
[ 13] 0x0000000114bbecdf /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwm_dispatcher.dylib+00019679 ZN13Mfh_MATLAB_fn11dispatch_fhEiPP11mxArray_tagiS2+00000335
[ 14] 0x000000011501003d /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwm_interpreter.dylib+01552445 _Z19inDispatchFromStackiPKcii+00001581
[ 15] 0x0000000114fbb698 /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwm_interpreter.dylib+01205912 inPcodeWalker+00019048
[ 16] 0x0000000114fb8f72 /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwm_interpreter.dylib+01195890 inPcodeWalker+00009026
[ 17] 0x0000000114fb476b /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwm_interpreter.dylib+01177451 inInterPcode+00000875
[ 18] 0x0000000114fb449d /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwm_interpreter.dylib+01176733 inInterPcode+00000157
[ 19] 0x0000000114fab3c1 /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwm_interpreter.dylib+01139649 _ZN12InterpBridge33DoMatlabFcnCallInDesiredWorkspaceEiPP11mxArray_tagiPPKS0_P13Mfh_MATLAB_fnP15inWorkSpace_tag+00003393
[ 20] 0x0000000114fad66b /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwm_interpreter.dylib+01148523 _Z25in_local_call_with_setjmpIN5boost3_bi6bind_tIvPFvPiP12_pcodeheaderS3_PP11mxArray_tag12inDebugCheckENS1_5list5INS1_5valueIS3_EENSD_IS5_EENS0_3argILi1EEENSG_ILi2EEENSD_IS9_EEEEEEEN6mlutil14cmddistributor17inExecutionStatusET_S3_S8_b+00000171
[ 21] 0x0000000114fa8e30 /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwm_interpreter.dylib+01130032 _Z12inEvalStringP15_memory_contextRKNSt3
112basic_stringIDsNS1_11char_traitsIDsEENS1_9allocatorIDsEEEE8EvalTypeiPP11mxArray_tag12inDebugCheckP12_pcodeheaderPib+00002720
[ 22] 0x0000000114fa9265 /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwm_interpreter.dylib+01131109 _Z19inEvalStringOnStackP15_memory_contextRKNSt3112basic_stringIDsNS1_11char_traitsIDsEENS1_9allocatorIDsEEEE8EvalTypeiPP11mxArray_tag12inDebugCheckP12_pcodeheaderPib+00000085
[ 23] 0x0000000114fa672a /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwm_interpreter.dylib+01120042 ZN12InterpBridge11FullEvalFcnEiPP11mxArray_tagiS2+00000330
[ 24] 0x0000000114bd6936 /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwm_dispatcher.dylib+00117046 ZN11Mfh_builtin11dispatch_mfEiPP11mxArray_tagiS2+00000086
[ 25] 0x0000000114bbecdf /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwm_dispatcher.dylib+00019679 ZN13Mfh_MATLAB_fn11dispatch_fhEiPP11mxArray_tagiS2+00000335
[ 26] 0x0000000114fe26e3 /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwm_interpreter.dylib+01365731 ZN12InterpBridge7CallFcnEiPP11mxArray_tagiS2_PKc+00000275
[ 27] 0x000000010fa49ece /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwmcr.dylib+00286414 _ZN11mcrInstance27feval_on_interpreter_threadEPKciPP11mxArray_tagiS4
+00000094
[ 28] 0x000000010fa4a1ad /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwmcr.dylib+00287149 ZN11mcrInstance18CallMATLABFunctionEPKciPP11mxArray_tagiS4+00000077
[ 29] 0x000000010fa4b05f /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwmcr.dylib+00290911 _ZN11mcrInstance10EvalStringERKNSt3
112basic_stringIDsNS0_11char_traitsIDsEENS0_9allocatorIDsEEEEiPP11mxArray_tag+00000143
[ 30] 0x000000010fa4b371 /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwmcr.dylib+00291697 _ZN11mcrInstance14clearAllOnExitEv+00000097
[ 31] 0x000000010fa5d7ed /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwmcr.dylib+00366573 _Z28mnShutdownMatlabInternalImplbbRKN5boost8optionalIiEEPibb+00000509
[ 32] 0x000000010fa5d52e /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwmcr.dylib+00365870 _Z34mnShutdownMatlabInternalWithSetJmpbbRKN5boost8optionalIiEEPibb+00000142
[ 33] 0x000000010fa5dcc2 /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwmcr.dylib+00367810 _Z24mnShutdownMatlabInternalbbRKN5boost8optionalIiEEPibb+00000050
[ 34] 0x000000010fa5e09c /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwmcr.dylib+00368796 _Z13mnFullExitFcniPP11mxArray_tagiS1
+00000300
[ 35] 0x0000000114bd6936 /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwm_dispatcher.dylib+00117046 ZN11Mfh_builtin11dispatch_mfEiPP11mxArray_tagiS2+00000086
[ 36] 0x0000000114bbecdf /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwm_dispatcher.dylib+00019679 ZN13Mfh_MATLAB_fn11dispatch_fhEiPP11mxArray_tagiS2+00000335
[ 37] 0x000000011501003d /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwm_interpreter.dylib+01552445 Z19inDispatchFromStackiPKcii+00001581
[ 38] 0x0000000114f73a88 /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwm_interpreter.dylib+00912008 inCallFcnFromReference+00000776
[ 39] 0x0000000114fb86c7 /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwm_interpreter.dylib+01193671 inPcodeWalker+00006807
[ 40] 0x0000000114fb476b /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwm_interpreter.dylib+01177451 inInterPcode+00000875
[ 41] 0x0000000114fb5886 /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwm_interpreter.dylib+01181830 _Z26inExecuteMFunctionOrScriptP6Mfh_mpb+00000886
[ 42] 0x000000011504b819 /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwm_interpreter.dylib+01796121 _Z10inRunMfileiPP11mxArray_tagiS1_P6Mfh_mpP15inWorkSpace_tag+00003401
[ 43] 0x0000000114c184f2 /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwm_dispatcher.dylib+00386290 _ZN8Mfh_file16dispatch_fh_implEMS_FviPP11mxArray_tagiS2_EiS2_iS2
+00000674
[ 44] 0x0000000114c185f3 /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwm_dispatcher.dylib+00386547 ZN8Mfh_file11dispatch_fhEiPP11mxArray_tagiS2+00000035
[ 45] 0x0000000114ff2ebd /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwm_interpreter.dylib+01433277 _Z23inEvalPcodeHeaderToWordP15_memory_contextiPP11mxArray_tagP12_pcodeheaderP6Mfh_mpj+00000141
[ 46] 0x0000000114fadadb /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwm_interpreter.dylib+01149659 _Z25in_local_call_with_setjmpIN5boost3_bi6bind_tIvPFvP15_memory_contextPiPP11mxArray_tagP12_pcodeheaderjENS1_5list5INS1_5valueIS4_EENS0_3argILi1EEENSG_ILi2EEENSE_ISA_EENSE_IiEEEEEEEN6mlutil14cmddistributor17inExecutionStatusET_S5_S8_b+00000171
[ 47] 0x0000000114fa8dc0 /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwm_interpreter.dylib+01129920 _Z12inEvalStringP15_memory_contextRKNSt3112basic_stringIDsNS1_11char_traitsIDsEENS1_9allocatorIDsEEEE8EvalTypeiPP11mxArray_tag12inDebugCheckP12_pcodeheaderPib+00002608
[ 48] 0x0000000114fa93dd /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwm_interpreter.dylib+01131485 _ZN12InterpBridge22EvalCmdWithLocalReturnERKNSt3
112basic_stringIDsNS0_11char_traitsIDsEENS0_9allocatorIDsEEEEPibb+00000141
[ 49] 0x0000000114fa9672 /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwm_interpreter.dylib+01132146 _ZN12InterpBridge33EvalCmdWithLocalReturnInDesiredWSERKNSt3112basic_stringIDsNS0_11char_traitsIDsEENS0_9allocatorIDsEEEEPibbP15inWorkSpace_tag+00000066
[ 50] 0x0000000114f0e5ce /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwm_interpreter.dylib+00497102 _Z51inEvalCmdWithLocalReturnInDesiredWSAndPublishEventsRKNSt3
112basic_stringIDsNS_11char_traitsIDsEENS_9allocatorIDsEEEEPibbP15inWorkSpace_tag+00000062
[ 51] 0x000000011494f91e /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwiqm.dylib+00194846 _ZNK3iqm18InternalEvalPlugin24inEvalCmdWithLocalReturnERKNSt3112basic_stringIDsNS1_11char_traitsIDsEENS1_9allocatorIDsEEEEP15inWorkSpace_tag+00000094
[ 52] 0x000000011494ef04 /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwiqm.dylib+00192260 _ZN3iqm18InternalEvalPlugin7executeEP15inWorkSpace_tagRN5boost10shared_ptrIN14cmddistributor17IIPCompletedEventEEE+00000148
[ 53] 0x00000001149470b3 /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwiqm.dylib+00159923 _ZNK3iqm17DefaultPacketInfo7executeEP15inWorkSpace_tag+00000259
[ 54] 0x000000011492a6af /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwiqm.dylib+00042671 _ZN3iqm10DefaultIqm7dequeueERKN5boost8optionalIKP15inWorkSpace_tagEEN14cmddistributor11IqmStreamIDE+00000591
[ 55] 0x0000000114b205f1 /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwbridge.dylib+00038385 _Z10ioReadLinebP7
sFILERKN5boost8optionalIKP15inWorkSpace_tagEEb+00000849
[ 56] 0x0000000114b20ffa /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwbridge.dylib+00040954 _Z10ioReadLinebP7__sFILEbRb+00000058
[ 57] 0x0000000114b28efb /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwbridge.dylib+00073467 _Z8mnParserv+00004427
[ 58] 0x0000000114b2756b /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwbridge.dylib+00066923 _Z22mnGetCommandLineBufferb+00000155
[ 59] 0x0000000114b27fbe /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwbridge.dylib+00069566 _Z8mnParserv+00000526
[ 60] 0x000000010fa4b132 /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwmcr.dylib+00291122 _ZN11mcrInstance30mnParser_on_interpreter_threadEv+00000034
[ 61] 0x000000010fa25021 /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwmcr.dylib+00135201 _ZN3mcr7runtime17InterpreterThread4Impl22TypedInvocationRequestIvE29doNotRethrowMxArrayExceptionsERKN5boost8functionIFvvEEE+00000033
[ 62] 0x000000010fa25ae9 /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwmcr.dylib+00137961 _ZN5boost6detail11task_objectIvNS_3_bi6bind_tIvPFvRKNS_8functionIFvvEEEENS2_5list1INS2_5valueIS6_EEEEEEE6do_runEv+00000025
[ 63] 0x000000010fa25476 /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwmcr.dylib+00136310 _ZN5boost6detail9task_baseIvE3runEv+00000182
[ 64] 0x000000010fa25217 /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwmcr.dylib+00135703 _ZN3mcr7runtime17InterpreterThread4Impl22TypedInvocationRequestIvE3runEv+00000023
[ 65] 0x000000010fa214e3 /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwmcr.dylib+00120035 _ZN3mcr7runtime17InterpreterThread4Impl26invocation_request_handlerEl+00000035
[ 66] 0x000000010f4a888d /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwservices.dylib+00182413 _ZN10eventqueue18UserEventQueueImpl5flushEv+00001053
[ 67] 0x00000001159a55f5 /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwuix.dylib+00038389 _Z25isHandleUserEventCallbackPFvPvE+00000469
[ 68] 0x000000010f570f8d /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwservices.dylib+01003405 _Z40svWS_ProcessPendingEventsWithLimitedRateb+00017149
[ 69] 0x000000010f56c372 /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwservices.dylib+00983922 _Z25svWS_ProcessPendingEventsiib+00000866
[ 70] 0x000000010f56c06b /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwservices.dylib+00983147 _Z25svWS_ProcessPendingEventsiib+00000091
[ 71] 0x000000010fa21737 /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwmcr.dylib+00120631 _ZN3mcr7runtime17InterpreterThread4Impl14process_eventsERKN5boost10shared_ptrIS2_EE+00000135
[ 72] 0x000000010fa21a6a /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwmcr.dylib+00121450 _ZN3mcr7runtime17InterpreterThread4Impl3runERKN5boost10shared_ptrIS2_EEPNS2_12init_contextE+00000346
[ 73] 0x000000010fa0a156 /Applications/MATLAB85i/MATLAB_R2015a.app/bin/maci64/libmwmcr.dylib+00024918 _Z26run_init_and_handle_eventsPv+00000054
[ 74] 0x00007fff8a63005a /usr/lib/system/libsystem_pthread.dylib+00016474 _pthread_body+00000131
[ 75] 0x00007fff8a62ffd7 /usr/lib/system/libsystem_pthread.dylib+00016343 _pthread_body+00000000
[ 76] 0x00007fff8a62d3ed /usr/lib/system/libsystem_pthread.dylib+00005101 thread_start+00000013

Any idea what's wrong?
Thank you very much for your help.
Cheers,

Bohumil

1 Attachments

Discussion

  • Ilya Belevich

    Ilya Belevich - 2016-01-08

    Hi Bohumil,
    hmm, it is hard to answer... I have not tested that on Mac (I don't have an easy access to Mac computer).
    On PC when I try to connect MIB to Fiji for the first time, Fiji also updates something and in addition adds few java libraries to Matlab directory "...\Matlab\sys\java\jre\win64\jre\".
    I will check that
    Ilya

     
  • Ilya Belevich

    Ilya Belevich - 2016-01-08

    I was able to reproduce the problem with R2014b. Most likely the problem is in some incompatibility between required Java libraries and Matlab.
    To recover Matlab and MIB you should delete new files that Fiji has copied to your Matlab folder (inside MATLAB_R2015a.app) earlier today. And restart Matlab.
    The path is:
    \Applications\MATLAB_R2015a.app\sys/java/jre/maci64/jre/lib/ext

    The files are:
    libjogl_awt.jnilib
    libjogl_cg.jnilib
    libjogl.jnilib
    gluegen-rt.jar
    jogl.jar
    libgluegen-rt.jnilib
    vecmath.jar
    j3dutils.jar
    j3dcore.jar

    I have no solution to this problem: it requires update of Java libraries that responsible for data exchange between Matlab and Fiji (http://bigwww.epfl.ch/sage/soft/mij/)
    One possible solution that may help is to use version of Matlab MATLAB R2014a and earlier.
    Also everything is working fine on Windows 7 64bit.

     
  • Ilya Belevich

    Ilya Belevich - 2018-11-13
    • status: New --> Started
     

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