adipoflux Wiki
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Is it possible to keep the same layout in CytoscapeWeb? Otherwise it will probably a complete mess. Yes - Done in beta
And concerning the visualization: Would it be possible in CytoscapeWeb to have something like a right-click menu? yes - we will build something like that and hoping by next week we can demo a beta version
For metabolites: - show all reactions where the metabolite is involved - mouse over shows the full metabolite name
For reactions: - show biochemical reaction equation - mouse over shows the full reaction name name - click function shows equation
For Gene: Mafalda regenerating ID since genes can appearing - show metanode - show all catalyzed reactions - link to UCSC GB