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From: David L. <da...@gm...> - 2012-07-19 01:00:16
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Hi guys, I really like HTSeq! I found a few bugs, and sent them to the maintainer a few weeks ago but have heard no response (holidays? Changed labs?) I've put up a fork of the SVN code base here, until the patches are put into the main branch: https://bitbucket.org/sacgf/htseq New Features: htseq-count works with bam files Wrote htseq-count-combine.py to merge multiple htseq-count outputs to one big CSV file Bug Fixes: GFF Fix by David Eccles (gringer) on this mailing list Fixed extend_to_include and GenomicInterval_from_directional attribute errors Single ended bam files had paired_end incorrectly set Sam/Bam mate start chrom incorrect default |
