GeneNetWeaver

GeneNetWeaver (GNW) is an open-source tool for in silico benchmark generation and performance profiling of network inference methods. GNW was used to generate the community-wide DREAM3, DREAM4 and DREAM5 In Silico Challenges.

Features

Extraction of modules from known transcriptional regulatory networks (E.coli, Yeast, etc.)
Generation of realistic in-silico gene network benchmarks for network inference methods
Simulation of realistic biological experiments (knowckout, knockdown, dual-knockout, multifactorial perturbations, time series, etc.)
Performance evaluation of network predictions (Precision-Recall, ROC, motif analysis)

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License

MIT License

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Additional Project Details

Intended Audience

Science/Research

User Interface

Java Swing

Programming Language

Java

Related Categories

Java Bio-Informatics Software

Registered

2008-07-25

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