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#5 gbrowse & FeatureFile.pm problem

closed
Gbrowse (14)
5
2004-12-28
2003-07-23
Anonymous
No

I have set up the latest version of gbrowse on suse linux
8.2, over a mySQL 4 database. I have also installed the
perl modules required and the latest stable release of
Bioperl 1.22.

The database has been populated with the yeast test
set, and the opening page is visible.

The overview image is shown but no detail image. Using
the search will successfully return a new (correct)
overview but no detail image again.

Investigating the web error log shows that the error is:-

"Can't coerce array into hash
at /usr/lib/perl5/site_perl/5.8.0/Bio/Graphics/FeatureFile.p
m line 1133, <DATA> line 191."

This is in the line :-
my @labels = keys %{$self->{_type2label}{$type}};

in

sub type2label

So either
1. I just failed to read the installation instructions
2. There is a problem in gbrowse
3. There is a problem in Featurefile.pm
4. There is another problem

Thanks in advance for any help with this as I am rather
looking forward to using this toolkit

Dr Alan Evans
alan.evans@syngenta.com

Discussion

  • Allen Day

    Allen Day - 2004-12-14
    • assigned_to: nobody --> scottcain
     
  • Scott Cain

    Scott Cain - 2004-12-28

    Logged In: YES
    user_id=616711

    So old as to be completely pointless.

     
  • Scott Cain

    Scott Cain - 2004-12-28
    • status: open --> closed
     
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