#14 Problem loading ontologies

[Emmanuel Quevillon]

Hi,

I just tried to install gmod-0.003. Everything went ok
untill I typed 'make ontologies'. This is the error
that been thrown :

euphorbe:/usr/local/src/gmod-0.003# make ontologies
./Build ontologies
Available ontologies:
[1] Relationship Ontology
[2] Sequence Ontology Feature Annotation
[3] Sequence Ontology
[4] Gene Ontology
[5] Embryonic Mouse Anatomy Ontology
[6] Mouse Anatomy Ontology
[7] Mammalian Phenotype Ontology
[8] Mouse Pathology Ontology (Pathbase)
[9] Cell Ontology
[10] Plant Ontology

Which ontologies would you like to load (Comma
delimited)? [0] 1,2,3,4
fetching files for Relationship Ontology

+http://cvs.sf.net/viewcvs.py/obo/obo/ontology/OBO_REL/rel.definitions?rev=HEAD
updated

+http://cvs.sf.net/viewcvs.py/obo/obo/ontology/OBO_REL/rel.ontology?rev=HEAD
updated
loading...DBD::Pg::st execute failed: ERREUR: Plus
d'une ligne renvoyée par une sous-requęte utilisée
comme une expression
[for Statement "SELECT indkey FROM pg_catalog.pg_index
WHERE indisprimary=true AND indrelid=(
SELECT oid FROM pg_catalog.pg_class
WHERE relname = ?)
" with ParamValues: 1='db'] at
/usr/local/share/perl/5.8.4/DBIx/ContextualFetch.pm
line 51.
Compilation failed in require at lib/Chado/LoadDBI.pm
line 5.
BEGIN failed--compilation aborted at
lib/Chado/LoadDBI.pm line 5.
Compilation failed in require at
./load/bin/gmod_load_ontology.pl line 7.
BEGIN failed--compilation aborted at
./load/bin/gmod_load_ontology.pl line 7.
System call './load/bin/gmod_load_ontology.pl
tmp/obo/OBO_REL/rel.ontology
tmp/obo/OBO_REL/rel.definitions' failed: 512
Died at /usr/local/src/gmod-0.003/lib/Chado/Builder.pm
line 298, <STDIN> line 1.
make: *** [ontologies] Erreur 2
euphorbe:/usr/local/src/gmod-0.003#

Can someone help me with that problem as I know that
ontologies are really necessary for gmod.
NB : I also tried to load he files using the perl
script gmod_load_ontology.pl but I received the same error.

Thanks a lot for your help

Regards

Emmanuel

[Scott Cain]

Logged In: YES
user_id=616711

Hello,

Please email the gmod-schema@lists.sourceforge.net mailing
list for support requests.

See the FAQ for gmod-0.003 for an answer to this question:

http://www.gmod.org/schema/gmod-0.003-faq.shtml

Scott