From: Lincoln S. <ls...@us...> - 2007-04-17 19:09:46
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Update of /cvsroot/gmod/Generic-Genome-Browser In directory sc8-pr-cvs2.sourceforge.net:/tmp/cvs-serv19191 Modified Files: Tag: stable INSTALL README Log Message: fixing documentation in anticipation of imminent release Index: README =================================================================== RCS file: /cvsroot/gmod/Generic-Genome-Browser/README,v retrieving revision 1.26.6.2.2.2.2.1 retrieving revision 1.26.6.2.2.2.2.2 diff -C2 -d -r1.26.6.2.2.2.2.1 -r1.26.6.2.2.2.2.2 *** README 1 Mar 2007 23:03:32 -0000 1.26.6.2.2.2.2.1 --- README 17 Apr 2007 19:09:44 -0000 1.26.6.2.2.2.2.2 *************** *** 3,7 **** Generic Model Organism Systems Database project (GMOD). ! - For a demo, go to http://www.gmod.org/ggb. - To install on your own system, please see the INSTALL file. --- 3,8 ---- Generic Model Organism Systems Database project (GMOD). ! - For a description of features and a demo, go to ! http://www.gmod.org/wiki/index.php/GBrowse - To install on your own system, please see the INSTALL file. *************** *** 11,19 **** http://localhost/gbrowse/tutorial. ! - To load your own data and configure GBrowse to display it, please ! see the file docs/pod/CONFIGURE_HOWTO.txt. ! - To initialize the database from one or more Genbank records, see ! docs/pod/GENBANK_HOWTO.txt. - This software is free. You can use it under the terms of the Perl --- 12,24 ---- http://localhost/gbrowse/tutorial. ! - To load your own data and configure GBrowse to display it, ! run the command: ! perldoc docs/pod/CONFIGURE_HOWTO.pod. ! ! - To initialize the database from one or more Genbank records, run the ! command: ! ! perldoc docs/pod/GENBANK_HOWTO.pod. - This software is free. You can use it under the terms of the Perl *************** *** 26,30 **** Lincoln Stein & the GMOD team ls...@cs... ! January 1, 2007 --- 31,35 ---- Lincoln Stein & the GMOD team ls...@cs... ! April 18, 2007 *************** *** 37,41 **** Marc Logghe <Mar...@de...> Aaron Mackey <am...@pc...> ! Sheldon McKay <sm...@bc...> Nathan O. Siemers <Nat...@bm...> Lincoln Stein <ls...@cs...> --- 42,46 ---- Marc Logghe <Mar...@de...> Aaron Mackey <am...@pc...> ! Sheldon McKay <mc...@cs...> Nathan O. Siemers <Nat...@bm...> Lincoln Stein <ls...@cs...> *************** *** 51,52 **** --- 56,59 ---- Marcela Tello-Ruiz <ma...@br...> (Spanish) Gudmundur Thorisson <mu...@cs...> (Icelandic) + + Also, many thanks to Brian Osborne for his maintenance of the GMOD WIKI and documentation pages. Index: INSTALL =================================================================== RCS file: /cvsroot/gmod/Generic-Genome-Browser/INSTALL,v retrieving revision 1.60.4.3.2.8.2.2 retrieving revision 1.60.4.3.2.8.2.3 diff -C2 -d -r1.60.4.3.2.8.2.2 -r1.60.4.3.2.8.2.3 *** INSTALL 17 Apr 2007 17:47:49 -0000 1.60.4.3.2.8.2.2 --- INSTALL 17 Apr 2007 19:09:44 -0000 1.60.4.3.2.8.2.3 *************** *** 1,93 **** Generic Genome Browser Installation - GBrowse is distributed as binary packages for Windows and Macintosh OS ! X, and as source code for Unix systems. ! ! 1. WINDOWS INSTALL ! ! Before installing on Windows systems, you will need to install ! ActiveState Perl and the Apache web server. You may also wish to install ! a database management system such as MySQL. [...999 lines suppressed...] ! cd HTDOCS/gbrowse/tmp ! find . -type f -atime +20 -print -exec rm {} \; ! Be sure to replace HTDOCS with the path to your web server HTML ! document root directory. You might want to run this command under ! cron, but be sure that the user that the cron job runs under has the ! proper permissions. You may need to install it in root's cron ! script. ! 17. BUG REPORTS AND SUPPORT REQUESTS ! Please report bugs to the GMOD project bug tracking system at ! <http://sourceforge.net/tracker/?group_id=27707&atid=391291>. EMail ! support is available by sending requests for help to ! <mailto:gmo...@li...>. ! Have fun! ! Lincoln Stein & the GMOD team |