From: David E. <em...@mo...> - 2007-08-21 23:09:23
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I'm curious, Eric, Can your GenBank adaptor handle the richer feature set which GenBank=20 format can carry? -Dave On Tue, 21 Aug 2007 18:24, Eric Just wrote: > yes, I'm game for updating our tool to use gff3 if it becomes supported= =20 > for Apollo.=A0 But the benefit of Genbank is that it is already working,= =20 > stable, and easy to generate and parse for the kind of data that Apollo= =20 > deals with. > Eric > > On 8/21/07, Chris Mungall <cj...@fr...> wrote: > >> My vote: >> >> GFF3 ++ >> Genbank -- >> >> On Aug 21, 2007, at 11:15 AM, Don Gilbert wrote: >> >>> >>> On this GFF adaptor topic, its difference from Genbank format, already >>> supported by Apollo and with Chado loaders, doesn't seem that much for >>> data transport. It might be useful to look closely at Eric Just's >>> use of >>> Genbank files for apollo <> chado, and decide from that if a GFF >>> adaptor >>> for such is a useful addition.=A0=A0- Don Gilbert >>> >>> -- d.gilbert--bioinformatics--indiana-u--bloomington-in-47405 >>> -- gil...@in...--http://marmot.bio.indiana.edu/ >>> >>> ---------------------------------------------------------------------- >>> --- >>> This SF.net email is sponsored by: Splunk Inc. >>> Still grepping through log files to find problems?=A0=A0Stop. >>> Now Search log events and configuration files using AJAX and a >>> browser. >>> Download your FREE copy of Splunk now >>=A0=A0http://get.splunk.com/ >>> _______________________________________________ >>> Gmod-schema mailing list >>> Gmo...@li... >>> https://lists.sourceforge.net/lists/listinfo/gmod-schema >>> > |