From: Zhiliang Hu <hu...@db...> - 2005-01-31 22:06:46
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On Mon, 31 Jan 2005, Lincoln Stein wrote: > Hi all, > > Multiple people are now reporting problems installing or using=20 > gbrowse. Most of these problems are related to the system not=20 > recognizing directories. > > I have a feeling that the recent version of perl has broken or changed=20 > the behavior of the -d operator. Either that, or there is an=20 > incompatibility with recent kernels. Does anyone have more insight? =20 > I am going to upgrade my system to 5.8.3 and see if I can reproduce=20 > the problem. > > Lincoln Good you are on top of it... hope my error from installing GBrowse 1.62 may provide more 'evidence' for you to diagnose - 'make test' or 'make install' complained it cannot locate "IO.pm" while I do find it in one of the paths: # make test ........(deleted lines).......... t/01yeast....Can't locate Bio/Root/IO.pm in @INC (@INC contains: /usr/local/lib/perl5/5.8.5/i686-linux /usr/local/lib/perl5/5.8.5/i686-linux /usr/local/lib/perl5/5.8.5 /usr/local/lib/perl5/site_perl/5.8.5/i686-linux /usr/local/lib/perl5/site_perl/5.8.5/i686-linux /usr/local/lib/perl5/site_perl/5.8.5 /usr/local/lib/perl5/site_perl/5.8.5/i686-linux /usr/local/lib/perl5/site_perl/5.8.5 /usr/local/lib/perl5/site_perl /usr/share/ . /usr/local/lib/perl5/5.8.5/i686-linux /usr/local/lib/perl5/5.8.5 /usr/local/lib/perl5/site_perl/5.8.5/i686-linux /usr/local/lib/perl5/site_perl/5.8.5 /usr/local/lib/perl5/site_perl /usr/share/ .) at t/01yeast.t line 9. BEGIN failed--compilation aborted at t/01yeast.t line 9. t/01yeast....dubious Test returned status 2 (wstat 512, 0x200) FAILED--1 test script could be run, alas--no output ever seen make: *** [test_dynamic] Error 2 # find / -name IO.pm /usr/lib/perl5/5.8.0/i386-linux-thread-multi/IO.pm /usr/local/lib/perl5/5.8.5/i686-linux/IO.pm /usr/local/lib/perl5/site_perl/5.8.5/SOAP/Transport/IO.pm |