Re: [GMOD-devel] Guidance from MO groups needed for cross-genome comparisons

[Allen D. <all...@uc...>]

what is MO ?

On Fri, 16 Apr 2004, Don Gilbert wrote:

> 
> Nathan,
> 
> For Drosophila_melanogaster genome, find these fasta files:
> ftp://flybase.net/genomes/Drosophila_melanogaster/current/fasta/
>   dmel_all_transcript_r3.2.0.fasta.gz
>    -- protein-coding and RNA transcripts
>   dmel_all_translation_r3.2.0.fasta.gz
>    -- protein translations (human curated)
>  
> ftp://flybase.net/genomes/Drosophila_melanogaster/current/dna-fasta/
>   README
>   This folder has chromosome dna files in fasta format.
>   Current release 3.2.0 dna is same as release 3.1.0
>   
>    -- single euchromatic chromosome files
>   2L_genomic_dmel_RELEASE3-1.FASTA.gz@
>   2R_genomic_dmel_RELEASE3-1.FASTA.gz@
>   3L_genomic_dmel_RELEASE3-1.FASTA.gz@
>   3R_genomic_dmel_RELEASE3-1.FASTA.gz@
>   4_genomic_dmel_RELEASE3-1.FASTA.gz@
>   X_genomic_dmel_RELEASE3-1.FASTA.gz@
>   
>    -- 'heterosomes', pseudo-chromosome files of heterochromatic scaffolds
>   2h_genomic_dmel_RELEASE3-1.FASTA.gz@
>   3h_genomic_dmel_RELEASE3-1.FASTA.gz@
>   U_genomic_dmel_RELEASE3-1.FASTA.gz@
>   Xh_genomic_dmel_RELEASE3-1.FASTA.gz@
>   Yh_genomic_dmel_RELEASE3-1.FASTA.gz@
>   
>   euchromatin_genomic_dmel_RELEASE3-1.FASTA.gz@ -- contains 2L,2R,3L,3R,4,X
>   heterochromatin_genomic_dmel_RELEASE3-1.FASTA.gz@ -- contains 2h,3h,U,Xh,Yh
>   whole_genome_genomic_dmel_RELEASE3-1.FASTA.gz@ -- contains all single chromosomes above
> 
> -- Don Gilbert
> -- d.gilbert--bioinformatics--indiana-u--bloomington-in-47405
> -- gil...@in...--http://marmot.bio.indiana.edu/
> 
> 
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