[Gmod-schema-cmts] schema/chado/chaos-xml/sample-data AE003734.chaos.xml,NONE,1.1 AE003734.gbk,NONE,1.1

[Chris M. <cmu...@us...>]

Update of /cvsroot/gmod/schema/chado/chaos-xml/sample-data
In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv1321/chaos-xml/sample-data

Added Files:
	AE003734.chaos.xml AE003734.gbk 
Log Message:
initial check-in for chaos-xml library

perl modules, DTD and XSL for handling the chaos-xml format

See README & index.html for details

At present this is alpha code and recommended only for BDGP members and
those of an adventurous disposition

This library will have a full public release on Oct 1 2004

Chaos-XML is an XML-isation of the Chado relational schema, hence its
presence as a subproject of chado. See the docs for a discussion of the
relational to XML mapping and a comparison with Chado-XML


--- NEW FILE: AE003734.chaos.xml ---
<?xml version="1.0" encoding="UTF-8"?>
<chaos>
  <chaos_metadata>
    <chaos_version>1</chaos_version>
    <chaos_flavour>cabal</chaos_flavour>
    <feature_unique_key>feature_id</feature_unique_key>
    <equiv_chado_release>chado_1_01</equiv_chado_release>
    <export_unixtime>1086808457</export_unixtime>
    <export_localtime>Wed Jun  9 12:14:17 2004</export_localtime>
    <export_host>heartbroken</export_host>
    <export_user>cjm</export_user>
    <export_perl5lib>:/users/cjm/cvs/sqlfairy/lib::/users/cjm/cvs/DBIx-DBStag:/users/cjm/stag::/users/cjm/cabal:/users/cjm/cvs/bioperl-live:/users/cjm/cvs/go-dev/go-db-perl:/users/cjm/cvs/go-dev/go-perl:/users/simonp/lib/site_perl/:/usr/local/bdgp/genie.2.2/lib:/users/cjm/cvs/bioperl-db:/users/cjm/cvs/flybase/scratch/dbwhiz:/users/cjm/cvs-priv/omicia/perl</export_perl5lib>
    <export_program>/users/cjm/cabal/scripts/cabal-genbank2chaos.pl</export_program>
  </chaos_metadata>
  <feature>
    <feature_id>AE003734.2</feature_id>
    <dbxrefstr>SEQDB:AE003734</dbxrefstr>
    <name>AE003734</name>
    <uniquename>AE003734/AE003734.2</uniquename>
[...12040 lines suppressed...]
      <locgroup>0</locgroup>
      <rank>0</rank>
    </featureloc>
    <featureprop>
      <type>gene</type>
      <value>Hsromega</value>
      <rank>0</rank>
    </featureprop>
    <featureprop>
      <type>locus_tag</type>
      <value>CR31400</value>
      <rank>0</rank>
    </featureprop>
  </feature>
  <feature_relationship>
    <subject_id>exon:EMBL/GenBank/SwissProt:AE003734:82801:87825</subject_id>
    <object_id>processed_transcript:EMBL/GenBank/SwissProt:AE003734:82801:87825</object_id>
    <type>part_of</type>
  </feature_relationship>
</chaos>

--- NEW FILE: AE003734.gbk ---
LOCUS       AE003644              263309 bp    DNA     linear   INV 14-FEB-2003
DEFINITION  Drosophila melanogaster chromosome 2L section 53 of 83 of the
            complete sequence.
ACCESSION   AE003644 AE002690 AE014134
VERSION     AE003644.3  GI:22946496
KEYWORDS    .
SOURCE      Drosophila melanogaster (fruit fly)
  ORGANISM  Drosophila melanogaster
            Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota;
            Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha;
            Ephydroidea; Drosophilidae; Drosophila.
REFERENCE   1  (bases 1 to 263309)
  AUTHORS   Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D.,
            Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F.,
            George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N.,
            Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X.,
            Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D.,
            Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L.,
            Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D.,
[...4878 lines suppressed...]
   262261 gaccagattt aagtcttcag agttcccaaa tttaaacaaa cttaggtcct aggtctccaa
   262321 tattatttaa agacgtcttt tttaacttat tcctatttag ataaaattca tagaattata
   262381 tatacagcct tttcttataa atgaacttaa cttaggactt aacttgtgat tgacggacat
   262441 tcacccacaa ctaaaccacg aaatgtgtca gcgacaatta caagaatccg aaactgtcgc
   262501 acaccggcac ttggccacgc cccgcacatc cggagccgca tccgtagtcc catccgtttc
   262561 cccatccgta cacccaactc caggctgcac aatatcaatt atcgggcttc aagtgtcgct
   262621 caagtgtcac gtcaaacacc aacacaaaat acgagcaaag agcatcgagc atccagcatt
   262681 gagtatctag catcgggaga cccgcgagca cacatgacaa tccagtttcc gccccgagca
   262741 tcctggctgc actttgcaac ccatccgggc ccccgaaccc atcaggacat gctcctttaa
   262801 cgcctccccc aatacgtgta tgtaagtaac attttgcgct tttgactttg attgattaca
   262861 aaagcaattg agcatatcgt cacgctgggg ggagcaaaaa aaaaaaaaaa tctgaaatcg
   262921 aacaaagcaa ggcaaatgaa ttaacataaa taaaagaggc caaggaacga attttcattg
   262981 acagcttccg acaaaaggaa aagcgtaggg caattagaag tatccatttt ccgttttcca
   263041 cctaccaatt ctaatgagca atgccttcta attttcatca aggcttctga ttttccaaat
   263101 cgcttatggc tgcgagattt cggtgaagct tctcagacag gcttgccatt aattagcaca
   263161 attgaagcgg gcttaacgac accctttgca aggctaatga aaataaaatt tcaattacgt
   263221 ttaattgata aactaatcaa caaaggtcga caggcaatga ttgatggggt tttctcgttc
   263281 tcttctttaa attttcgtag aagtacata
//