[Gmod-schema-cmts] schema/chado INSTALL,1.26,1.27 Makefile.PL,1.61,1.62 TODO,1.19,1.20

[Scott C. <sco...@us...>]

Update of /cvsroot/gmod/schema/chado
In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv16668

Modified Files:
	INSTALL Makefile.PL TODO 
Log Message:
starting to get devel guide compliance


Index: TODO
===================================================================
RCS file: /cvsroot/gmod/schema/chado/TODO,v
retrieving revision 1.19
retrieving revision 1.20
diff -C2 -d -r1.19 -r1.20
*** TODO	6 May 2004 19:46:00 -0000	1.19
--- TODO	13 May 2004 02:50:40 -0000	1.20
***************
*** 1,5 ****
  TODO for the next alpha release (SOON!)
- * fix the gff loader for ambigous cvterms like 'centromere'
- (ie, check both the name and the cv_id)
  
  * Have things install in GMOD_ROOT:
--- 1,3 ----

Index: Makefile.PL
===================================================================
RCS file: /cvsroot/gmod/schema/chado/Makefile.PL,v
retrieving revision 1.61
retrieving revision 1.62
diff -C2 -d -r1.61 -r1.62
*** Makefile.PL	30 Apr 2004 21:00:48 -0000	1.61
--- Makefile.PL	13 May 2004 02:50:40 -0000	1.62
***************
*** 366,369 ****
--- 366,370 ----
    '', 
    'Building with the following database options:',
+   "  GMOD_ROOT=$O{'GMOD_ROOT'}",
    "  DBDRIVER=$DBDRIVER",
    "  DBNAME=$DBNAME",
***************
*** 490,493 ****
--- 491,495 ----
            'load/bin/load_gff3.PLS'       => 'load/bin/gmod_load_gff3.pl',
            'load/bin/load_ontology.PLS'   => 'load/bin/gmod_load_ontology.pl',
+           'install/conf_install.PLS'     => 'install/conf_install.pl',
      },
      EXE_FILES             => [
***************
*** 546,549 ****
--- 548,559 ----
  }
  
+ sub MY::install {
+   package MY;
+   my $inherited = shift->SUPER::install(@_);
+   $inherited =~ s/doc_install/doc_install conf_install/;
+   $inherited;
+ }
+ 
+ 
  #sub MY::install {
  #  package MY;
***************
*** 558,562 ****
--- 568,575 ----
  
  sub MY::postamble {
+   my $root = "'GMOD_ROOT=$O{GMOD_ROOT}'";
    qq{
+ conf_install ::
+ 	\$(PERL) \"$working_dir/install/conf_install.pl\" $root
  
  cvtermpath ::

Index: INSTALL
===================================================================
RCS file: /cvsroot/gmod/schema/chado/INSTALL,v
retrieving revision 1.26
retrieving revision 1.27
diff -C2 -d -r1.26 -r1.27
*** INSTALL	7 May 2004 20:11:58 -0000	1.26
--- INSTALL	13 May 2004 02:50:40 -0000	1.27
***************
*** 137,142 ****
          Answering yes skips questions about what exensions to use, and
          eliminates the need to have SQL::Translator installed.  This
!         is recomended, and all that is necessary in order to use the
!         full schema and run GBrowse on top of it.
  
          *   Use values in '/home/scott/schema/chado/build.conf'? [Y]
--- 137,142 ----
          Answering yes skips questions about what exensions to use, and
          eliminates the need to have SQL::Translator installed.  This
!         is recomended, and that is all that is necessary in order to use
!         the full schema and run GBrowse on top of it.
  
          *   Use values in '/home/scott/schema/chado/build.conf'? [Y]