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From: Scott C. <sco...@us...> - 2004-05-13 02:50:49
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Update of /cvsroot/gmod/schema/chado In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv16668 Modified Files: INSTALL Makefile.PL TODO Log Message: starting to get devel guide compliance Index: TODO =================================================================== RCS file: /cvsroot/gmod/schema/chado/TODO,v retrieving revision 1.19 retrieving revision 1.20 diff -C2 -d -r1.19 -r1.20 *** TODO 6 May 2004 19:46:00 -0000 1.19 --- TODO 13 May 2004 02:50:40 -0000 1.20 *************** *** 1,5 **** TODO for the next alpha release (SOON!) - * fix the gff loader for ambigous cvterms like 'centromere' - (ie, check both the name and the cv_id) * Have things install in GMOD_ROOT: --- 1,3 ---- Index: Makefile.PL =================================================================== RCS file: /cvsroot/gmod/schema/chado/Makefile.PL,v retrieving revision 1.61 retrieving revision 1.62 diff -C2 -d -r1.61 -r1.62 *** Makefile.PL 30 Apr 2004 21:00:48 -0000 1.61 --- Makefile.PL 13 May 2004 02:50:40 -0000 1.62 *************** *** 366,369 **** --- 366,370 ---- '', 'Building with the following database options:', + " GMOD_ROOT=$O{'GMOD_ROOT'}", " DBDRIVER=$DBDRIVER", " DBNAME=$DBNAME", *************** *** 490,493 **** --- 491,495 ---- 'load/bin/load_gff3.PLS' => 'load/bin/gmod_load_gff3.pl', 'load/bin/load_ontology.PLS' => 'load/bin/gmod_load_ontology.pl', + 'install/conf_install.PLS' => 'install/conf_install.pl', }, EXE_FILES => [ *************** *** 546,549 **** --- 548,559 ---- } + sub MY::install { + package MY; + my $inherited = shift->SUPER::install(@_); + $inherited =~ s/doc_install/doc_install conf_install/; + $inherited; + } + + #sub MY::install { # package MY; *************** *** 558,562 **** --- 568,575 ---- sub MY::postamble { + my $root = "'GMOD_ROOT=$O{GMOD_ROOT}'"; qq{ + conf_install :: + \$(PERL) \"$working_dir/install/conf_install.pl\" $root cvtermpath :: Index: INSTALL =================================================================== RCS file: /cvsroot/gmod/schema/chado/INSTALL,v retrieving revision 1.26 retrieving revision 1.27 diff -C2 -d -r1.26 -r1.27 *** INSTALL 7 May 2004 20:11:58 -0000 1.26 --- INSTALL 13 May 2004 02:50:40 -0000 1.27 *************** *** 137,142 **** Answering yes skips questions about what exensions to use, and eliminates the need to have SQL::Translator installed. This ! is recomended, and all that is necessary in order to use the ! full schema and run GBrowse on top of it. * Use values in '/home/scott/schema/chado/build.conf'? [Y] --- 137,142 ---- Answering yes skips questions about what exensions to use, and eliminates the need to have SQL::Translator installed. This ! is recomended, and that is all that is necessary in order to use ! the full schema and run GBrowse on top of it. * Use values in '/home/scott/schema/chado/build.conf'? [Y] |