[Gmod-schema-cmts] schema/chado/bin AutoDBI.PL,1.1,1.2

[Scott C. <sco...@us...>]

Update of /cvsroot/gmod/schema/chado/bin
In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv2062/bin

Modified Files:
	AutoDBI.PL 
Log Message:
updated AutoDBI.PL, also added new gbrowse release to the manifest


Index: AutoDBI.PL
===================================================================
RCS file: /cvsroot/gmod/schema/chado/bin/AutoDBI.PL,v
retrieving revision 1.1
retrieving revision 1.2
diff -C2 -d -r1.1 -r1.2
*** AutoDBI.PL	15 Mar 2004 18:58:33 -0000	1.1
--- AutoDBI.PL	25 Mar 2004 21:10:06 -0000	1.2
***************
*** 92,103 ****
  );
  
- sub arrays {
-     return shift->array_manufacturer_id
- }
- 
- Chado::Contact->has_many(
-     'array_manufacturer_id', 'Chado::Array' => 'manufacturer_id'
- );
- 
  sub assays {
      return shift->assay_operator_id
--- 92,95 ----
***************
*** 116,119 ****
--- 108,119 ----
  );
  
+ sub arraydesigns {
+     return shift->arraydesign_manufacturer_id
+ }
+ 
+ Chado::Contact->has_many(
+     'arraydesign_manufacturer_id', 'Chado::Arraydesign' => 'manufacturer_id'
+ );
+ 
  sub authors {
      return shift->author_contact_id
***************
*** 218,229 ****
  );
  
- sub arrays {
-     return shift->array_dbxref_id
- }
- 
- Chado::Dbxref->has_many(
-     'array_dbxref_id', 'Chado::Array' => 'dbxref_id'
- );
- 
  sub features {
      return shift->feature_dbxref_id
--- 218,221 ----
***************
*** 242,245 ****
--- 234,245 ----
  );
  
+ sub arraydesigns {
+     return shift->arraydesign_dbxref_id
+ }
+ 
+ Chado::Dbxref->has_many(
+     'arraydesign_dbxref_id', 'Chado::Arraydesign' => 'dbxref_id'
+ );
+ 
  sub studys {
      return shift->study_dbxref_id
***************
*** 471,474 ****
--- 471,486 ----
  );
  
+ sub arraydesigns {
+     return shift->arraydesign_platformtype_id
+ }
+ 
+ Chado::Cvterm->has_many(
+     'arraydesign_platformtype_id', 'Chado::Arraydesign' => 'platformtype_id'
+ );
+ 
+ Chado::Cvterm->has_many(
+     'arraydesign_substratetype_id', 'Chado::Arraydesign' => 'substratetype_id'
+ );
+ 
  sub biomaterial_relationships {
      return shift->biomaterial_relationship_type_id
***************
*** 635,650 ****
  sub dbxrefs { my $self = shift; return map $_->dbxref_id, $self->cvterm_dbxref_cvterm_id }
  
- sub arrays {
-     return shift->array_platformtype_id
- }
- 
- Chado::Cvterm->has_many(
-     'array_platformtype_id', 'Chado::Array' => 'platformtype_id'
- );
- 
- Chado::Cvterm->has_many(
-     'array_substratetype_id', 'Chado::Array' => 'substratetype_id'
- );
- 
  sub assayprops {
      return shift->assayprop_type_id
--- 647,650 ----
***************
*** 2642,2653 ****
  }
  
- sub arrays {
-     return shift->array_protocol_id
- }
- 
- Chado::Protocol->has_many(
-     'array_protocol_id', 'Chado::Array' => 'protocol_id'
- );
- 
  sub treatments {
      return shift->treatment_protocol_id
--- 2642,2645 ----
***************
*** 2674,2677 ****
--- 2666,2677 ----
  );
  
+ sub arraydesigns {
+     return shift->arraydesign_protocol_id
+ }
+ 
+ Chado::Protocol->has_many(
+     'arraydesign_protocol_id', 'Chado::Arraydesign' => 'protocol_id'
+ );
+ 
  sub protocolparams {
      return shift->protocolparam_protocol_id
***************
*** 2765,2773 ****
  
  # -------------------------------------------------------------------
! package Chado::Array;
  use base 'Chado::DBI';
  use Class::DBI::Pager;
  
! Chado::Array->set_up_table('array');
  
  
--- 2765,2773 ----
  
  # -------------------------------------------------------------------
! package Chado::Arraydesign;
  use base 'Chado::DBI';
  use Class::DBI::Pager;
  
! Chado::Arraydesign->set_up_table('arraydesign');
  
  
***************
*** 2776,2783 ****
  #
  sub id {
!     shift->array_id
  }
  
! Chado::Array->has_a(
      manufacturer_id => 'Chado::Contact'
  );
--- 2776,2783 ----
  #
  sub id {
!     shift->arraydesign_id
  }
  
! Chado::Arraydesign->has_a(
      manufacturer_id => 'Chado::Contact'
  );
***************
*** 2787,2791 ****
  }
  
! Chado::Array->has_a(
      platformtype_id => 'Chado::Cvterm'
  );
--- 2787,2791 ----
  }
  
! Chado::Arraydesign->has_a(
      platformtype_id => 'Chado::Cvterm'
  );
***************
*** 2795,2799 ****
  }
  
! Chado::Array->has_a(
      substratetype_id => 'Chado::Cvterm'
  );
--- 2795,2799 ----
  }
  
! Chado::Arraydesign->has_a(
      substratetype_id => 'Chado::Cvterm'
  );
***************
*** 2803,2807 ****
  }
  
! Chado::Array->has_a(
      protocol_id => 'Chado::Protocol'
  );
--- 2803,2807 ----
  }
  
! Chado::Arraydesign->has_a(
      protocol_id => 'Chado::Protocol'
  );
***************
*** 2811,2815 ****
  }
  
! Chado::Array->has_a(
      dbxref_id => 'Chado::Dbxref'
  );
--- 2811,2815 ----
  }
  
! Chado::Arraydesign->has_a(
      dbxref_id => 'Chado::Dbxref'
  );
***************
*** 2820,2844 ****
  
  sub arrayprops {
!     return shift->arrayprop_array_id
  }
  
! Chado::Array->has_many(
!     'arrayprop_array_id', 'Chado::Arrayprop' => 'array_id'
  );
  
  sub assays {
!     return shift->assay_array_id
  }
  
! Chado::Array->has_many(
!     'assay_array_id', 'Chado::Assay' => 'array_id'
  );
  
  sub elements {
!     return shift->element_array_id
  }
  
! Chado::Array->has_many(
!     'element_array_id', 'Chado::Element' => 'array_id'
  );
  
--- 2820,2844 ----
  
  sub arrayprops {
!     return shift->arrayprop_arraydesign_id
  }
  
! Chado::Arraydesign->has_many(
!     'arrayprop_arraydesign_id', 'Chado::Arrayprop' => 'arraydesign_id'
  );
  
  sub assays {
!     return shift->assay_arraydesign_id
  }
  
! Chado::Arraydesign->has_many(
!     'assay_arraydesign_id', 'Chado::Assay' => 'arraydesign_id'
  );
  
  sub elements {
!     return shift->element_arraydesign_id
  }
  
! Chado::Arraydesign->has_many(
!     'element_arraydesign_id', 'Chado::Element' => 'arraydesign_id'
  );
  
***************
*** 2859,2867 ****
  
  Chado::Arrayprop->has_a(
!     array_id => 'Chado::Array'
  );
  
! sub array {
!     return shift->array_id
  }
  
--- 2859,2867 ----
  
  Chado::Arrayprop->has_a(
!     arraydesign_id => 'Chado::Arraydesign'
  );
  
! sub arraydesign {
!     return shift->arraydesign_id
  }
  
***************
*** 2890,2898 ****
  
  Chado::Assay->has_a(
!     array_id => 'Chado::Array'
  );
  
! sub array {
!     return shift->array_id
  }
  
--- 2890,2898 ----
  
  Chado::Assay->has_a(
!     arraydesign_id => 'Chado::Arraydesign'
  );
  
! sub arraydesign {
!     return shift->arraydesign_id
  }
  
***************
*** 3686,3694 ****
  
  Chado::Element->has_a(
!     array_id => 'Chado::Array'
  );
  
! sub array {
!     return shift->array_id
  }
  
--- 3686,3694 ----
  
  Chado::Element->has_a(
!     arraydesign_id => 'Chado::Arraydesign'
  );
  
! sub arraydesign {
!     return shift->arraydesign_id
  }