[Gmod-schema-cmts] schema/chado/load/etc initialize.sql,1.5,1.6 log.conf,1.1,1.2

[<all...@us...>]

Update of /cvsroot/gmod/schema/chado/load/etc
In directory sc8-pr-cvs1:/tmp/cvs-serv17191/load/etc

Modified Files:
	initialize.sql log.conf 
Log Message:
adding debugging api for load_affyxls load script.  fixed load_affyxls bug
related to the parser not expecting a full system path in front of the
filename.

added a survival_time cvterm to initialize.sql


Index: initialize.sql
===================================================================
RCS file: /cvsroot/gmod/schema/chado/load/etc/initialize.sql,v
retrieving revision 1.5
retrieving revision 1.6
diff -C2 -d -r1.5 -r1.6
*** initialize.sql	23 Nov 2003 04:14:32 -0000	1.5
--- initialize.sql	2 Dec 2003 01:45:38 -0000	1.6
***************
*** 13,16 ****
--- 13,17 ----
  insert into cvterm (name,cv_id) values ('child',      (select cv_id from cv where name = 'Ad Hoc Ontology'));
  insert into cvterm (name,cv_id) values ('fetus',      (select cv_id from cv where name = 'Ad Hoc Ontology'));
+ insert into cvterm (name,cv_id) values ('survival_time',(select cv_id from cv where name = 'Ad Hoc Ontology'));
  insert into cvterm (name,definition,cv_id) values ('glass','glass array',(select cv_id from cv where name = 'Ad Hoc Ontology'));
  insert into cvterm (name,definition,cv_id) values ('photochemical_oligo','in-situ photochemically synthesized oligoes',(select cv_id from cv where name = 'Ad Hoc Ontology'));

Index: log.conf
===================================================================
RCS file: /cvsroot/gmod/schema/chado/load/etc/log.conf,v
retrieving revision 1.1
retrieving revision 1.2
diff -C2 -d -r1.1 -r1.2
*** log.conf	6 Nov 2003 04:04:57 -0000	1.1
--- log.conf	2 Dec 2003 01:45:38 -0000	1.2
***************
*** 4,5 ****
--- 4,11 ----
  log4perl.appender.Chado_Builder.layout                        = Log::Log4perl::Layout::PatternLayout
  log4perl.appender.Chado_Builder.layout.ConversionPattern      =%c - [%d{HH:mm}] %M() in file .../%F{2} (line %L) says: %m%n
+ 
+ log4perl.logger.load_affyxls                                  = DEBUG, load_affyxls
+ log4perl.appender.load_affyxls                                = Log::Log4perl::Appender::File
+ log4perl.appender.load_affyxls.filename                       = load/logs/load.log
+ log4perl.appender.load_affyxls.layout                         = Log::Log4perl::Layout::PatternLayout
+ log4perl.appender.load_affyxls.layout.ConversionPattern       =%c - [%d{HH:mm}] %M() in file .../%F{2} (line %L) says: %m%n