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Re: [GMOD-devel] Re: BioCon2003 GMOD workshop
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From: Scott C. <ca...@cs...> - 2003-01-22 00:09:42
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The more the Merrier! See you then. Scott On Tue, 2003-01-21 at 18:02, David Block wrote: > GMOD-ers: > > Peter Dimitrov and I have some modifications to the Apollo source tree > that are ready to be integrated right now. You're coming to our > backyard. We'd like to drop in. > > What do we have? > > 1)Semantic zooming > 2)WebStart of Apollo > 3)Apollo on BioSQL > > The last is not a full port, but a start. Others could use it as a > starting point and go further. We have what we need, which is a > display of what is where on the various assemblies we work off of. > > So we'd like to crash the meeting. Would that be all right with you? > > Dave Block > GNF > San Diego > > > On Tuesday, January 21, 2003, at 02:34 PM, Scott Cain wrote: > > > On Tue, 2003-01-21 at 16:55, Nomi Harris wrote: > >> On 21 January 2003, Scott Cain wrote: > >>> I would tend to agree that the major concern for every GMOD project > >>> right now is interoperability. While each project may have its own > >>> list > >>> of TODOs, in order for GMOD to be successful, inter-app > >>> communication is > >>> pretty important. Certainly, a key to that is widespread adoption of > >>> chado. Therefore, I suggest that the afternoon sessions be more > >>> focused > >>> on development issues, with as much focus on chado as possible. I > >>> also > >>> agree that 'ease of use' issues, particularly with regard to data > >>> exchange, are very important, so we should spend time on that as > >>> well. > >>> Could you put together a "top 5 or 10" list of issues you would like > >>> address? > >> > >> Ok. Should I send this in email or just bring it to the meeting? > > > > I'd like to see it before if possible. > >> > >> Clearly, what we'd like to see in the future is tools that make it > >> easy > >> to generate chado(-xml?) output from all the popular sequence analysis > >> programs, and we can enable Apollo to read/write chado. But I see > >> that > >> as somewhat long-term, and feel that we need more immediate solutions > >> to > >> the problem of letting people read their own data into Apollo. > > > > Definately, though I don't know how much can be addressed at this > > meeting, with the exception of GBrowse<->Apollo incompatabilities. > > These > > should be addressed for sure. > >> > >>> As for who can attend, the meeting is open to "developers and > >>> curators > >>> of model organism system databases." It seems to me that your > >>> acquaintances from Ceres would be welcome to attend. > >> > >> Great. I will pass on the word. There's no fee for attending this > >> meeting, right? > > > > That's true. > >> > >> Should I also advertise this GMOD meeting on the apollo mailing list? > >> Should we ask the O'Reilly people to add it to the BOFs page > >> (http://conferences.oreillynet.com/pub/w/21/bof.html)? There are > >> disadvantages to having a lot of people at this kind of meeting, but > >> it > >> seems like we are arbitrarily excluding people by not spreading the > >> word. > > > > Actually, the meeting is listed on O'Reilly's site under 'Community > > Meetings' (http://conferences.oreillynet.com/pub/w/21/community.html) > > You can certainly mention this to the Apollo list. It is true that too > > many people can cause a loss of focus. At any rate, I doubt that many > > people would come with this late of notice. > >> > >> Nomi > >> > >> > >> ------------------------------------------------------- > >> This SF.net email is sponsored by: Scholarships for Techies! > >> Can't afford IT training? All 2003 ictp students receive scholarships. > >> Get hands-on training in Microsoft, Cisco, Sun, Linux/UNIX, and more. > >> www.ictp.com/training/sourceforge.asp > >> _______________________________________________ > >> Gmod-devel mailing list > >> Gmo...@li... > >> https://lists.sourceforge.net/lists/listinfo/gmod-devel > > -- > > ----------------------------------------------------------------------- > > - > > Scott Cain, Ph. D. > > ca...@cs... > > GMOD Coordinator (http://www.gmod.org/) > > 216-392-3087 > > Cold Spring Harbor Laboratory > > > > > > > > ------------------------------------------------------- > > This SF.net email is sponsored by: Scholarships for Techies! > > Can't afford IT training? All 2003 ictp students receive scholarships. > > Get hands-on training in Microsoft, Cisco, Sun, Linux/UNIX, and more. > > www.ictp.com/training/sourceforge.asp > > _______________________________________________ > > Gmod-devel mailing list > > Gmo...@li... > > https://lists.sourceforge.net/lists/listinfo/gmod-devel > > > -- > > ---------------------------------------------- > David Block -- Genome Informatics Developer > db...@gn... > http://radio.weblogs.com/0104507 > (858)812-1513 -- ------------------------------------------------------------------------ Scott Cain, Ph. D. ca...@cs... GMOD Coordinator (http://www.gmod.org/) 216-392-3087 Cold Spring Harbor Laboratory |