[GMOD-devel] Target class on gbrowse

[Marco A. V. C. <mav...@bi...>]

Hi Lincoln,

When I'm using SeqFeature::Generic to get a GFF format, I use this
syntax to have a Target ( blast ):

...code...

   -tag     => {
      Target => "Sequence:$query ".$start." ".$end,
               }

...code...

but this cause the start and end to be inside the quotes, like:

Target "Sequence:PM2-MT0009-180400-001-g02 9 374"

This can cause problems with gbrowse?. since in your documentation the
examples has the numbers outside the quotes. Of course I'm having not
track displayed, so I'm hunting bugs, check this GFF, it can cause trouble?

<GFF>
Chr13   ORESTES.MEGABLAST       alignment       71191038        71191231
         5e-58   +       .       Target
"Sequence:PM2-MT0009-180400-001-h01 6 40"
</GFF>

Thank you.
Marco.

-- 
Marco Aurélio Valtas Cunha
Laboratório de Bioinformática
Hemocentro de Ribeirão Preto
Tel 55 16 3963-9300 R: 9603
http://bit.fmrp.usp.br

"In all affairs it's a healthy thing now and then to hang a question
mark on the things you have long taken for granted."
Bertrand Russell