From: Vijay B. <uda...@gm...> - 2016-08-22 14:24:03
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Hi GMOD In /bin/data/tracks.conf I have [tracks.alignments] urlTemplate = FM.01.new.sorted.chr11.bam type = Alignments2 And the tracks.conf in /data is empty. In /bin/data/trackList.json I have "tracks" : [ { "urlTemplate" : "seq/{refseq_dirpath}/{refseq}-", "storeClass" : "JBrowse/Store/Sequence/StaticChunked", "key" : "Reference sequence", "chunkSize" : 20000, "category" : "Reference sequence", "label" : "DNA", "type" : "SequenceTrack" }, { "storeClass" : "JBrowse/Store/SeqFeature/NCList", "key" : "dna", "label" : "dna", "trackType" : "/var/www/jbrowse/JBrowse-1.11.0/src/JBrowse/GenomeView.$ "urlTemplate" : "tracks/dna/{refseq}/trackData.json", "compress" : 0, "style" : { "className" : "feature", "color" : "function(feature) {return 'red'; }" }, "type" : "/var/www/jbrowse/JBrowse-1.11.0/src/JBrowse/GenomeView.js" }, { "type" : "FeatureTrack", "style" : { "className" : "feature" }, "compress" : 0, "urlTemplate" : "FM.01.new.sorted.chr11.bam", "trackType" : null, "label" : "vijay", "key" : "vijay", "storeClass" : "JBrowse/Store/SeqFeature/BAM" } ], "names" : { "url" : "names/", "type" : "Hash" }, "formatVersion" : 1 } This is my complete conf file. Now when I cleared the cache and refreshed the browser, I can only find the reference sequences track and all my previous tracks have been disappeared. Could anyone please help me bring back the tracks and how can I edit those tracks. Thanks. Regards Vijay. On Sun, Aug 21, 2016 at 11:54 AM, Lbl <nat...@lb...> wrote: > Please post the full error and full tracks.conf and verify that the older > tracks.conf is not cached. You can do this under the networks developer > tab under chrome or Firefox per Scott's earlier advice. > > > On Aug 21, 2016, at 8:13 AM, Vijay Bhasker <uda...@gm...> wrote: > > > > Hi GMOD > > > > I have changed the key name for some tracks in volvox.json but the track > names remains the same in the browser even after refreshing it. Also, when > I click on some tracks it shows the error message "Unable to fetch the > ../.gff3". Could anyone please help me resolve this issue. > > > > Thanks. > > > > Regards > > Vijay. > > ------------------------------------------------------------ > ------------------ > > _______________________________________________ > > Gmod-ajax mailing list > > Gmo...@li... > > https://lists.sourceforge.net/lists/listinfo/gmod-ajax > |