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Re: [Gmod-tripal-devel] object from empty value
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From: Tony P. <po...@gm...> - 2012-05-24 17:47:49
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Hi Lacey, I can see the changes on the organism/analysis. I can access to the organism/analyis. The links can be found in: "Home › Administer › Content management › Content". I guess this should answer to your question about the details in chado, right? Chado is inside the drupal database. About the last point, I am sending you a screenshot of "Views > Edit" and, I guess, the problem should be related to: Broken/missing handler: organism > num_features Broken/missing handler Number of Stocks Broken/missing handler Number of Libraries How can I fix it? I don't know a lot about views, but if you let me know what to do, I'll fix it. Thank you very, Tony On Thu, May 24, 2012 at 4:25 PM, Lacey-Anne Sanderson <lac...@sh...> wrote: > > Hi Tony, > > After you edit the organism/analysis do you see your changes reflected on the page for that particular organism/analysis? or do you find that all the details stored in chado disappear (i.e.: no common_name, genus, etc.)? > > Is chado and drupal in the same database in your installation (If you installed chado using Tripal then it is) ? If it is can you add the node ID and node title to your view and tell me what you get in those columns for the edited organism/analysis versus the newly created ones? > > Thanks! > ~Lacey > > PS. I am also unable to reproduce this on Ubuntu. > > On 2012-05-24, at 8:14 AM, Stephen Ficklin wrote: > > Hi Lacey, > > I'm stumped on this one. Any idea what would cause the view to not link to the node when he edits an organism? I can't reproduce the error. But he uses a more secure version of Debian that has strict PHP turned on. So, perhaps that may have an effect. > > Stephen > > -------- Original Message -------- > Subject: Re: [Gmod-tripal-devel] object from empty value > Date: Thu, 24 May 2012 14:41:28 +0100 > From: Tony Power <po...@gm...> > To: Stephen Ficklin <spf...@gm...> > CC: gmo...@li... > > > Hi Stephen, > > It's fine now. > Nevertheless, there is something that happens all the time. I have no > idea of what it could be. > When I edit either an organism or an analysis, I lose the link the > organism/analysis on the organisms (or analyses) page. > As you previously showed me, I can create a direct link in the menu, > but if I wanted to have 20 organisms (analyses), that would be a > problem. > Is that a known issue? > > Thanks, > Tony > > On Thu, May 24, 2012 at 2:18 PM, Stephen Ficklin <spf...@gm...> wrote: > > Hi Tony, > > > > Looks like another one of those missing stdClass definitions. I adjusted > > the code to fix it and committed the change. Let me know if you still have > > the problem. > > > > Stephen > > > > > > On 5/24/2012 7:02 AM, Tony Power wrote: > >> > >> Hi all, > >> > >> This happened after the creation of an analysis: > >> > >> warning: Creating default object from empty value in > >> > >> /etc/drupal/6/sites/all/modules/tripal/tripal_analysis/tripal_analysis.module > >> on line 496. > >> > >> Cheers, > >> Tony > >> > >> > >> ------------------------------------------------------------------------------ > >> Live Security Virtual Conference > >> Exclusive live event will cover all the ways today's security and > >> threat landscape has changed and how IT managers can respond. Discussions > >> will include endpoint security, mobile security and the latest in malware > >> threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ > >> _______________________________________________ > >> Gmod-tripal-devel mailing list > >> Gmo...@li... > >> https://lists.sourceforge.net/lists/listinfo/gmod-tripal-devel > > > > > > |