|
From: Michael D. <mic...@bc...> - 2012-02-28 13:35:35
|
Hi, I am installing chado 1.2 on MacOS 10.8, perl 5.12.3, following the INSTALL.chado manual and have managed to do make load_schema When I run make prepdb I get following error: BEGIN failed--compilation aborted at bin/gmod_add_organism.pl line 7. Adding Daphnia pulex to the database... Can't locate Bio/GMOD/Config.pm in @INC (@INC contains: /home/scott/cvs_stuff/schema/chado/lib /home/cain/cvs_stuff/schema/chado/lib /Library/Perl/5.12/darwin-thread-multi-2level /Library/Perl/5.12 /Network/Library/Perl/5.12/darwin-thread-multi-2level /Network/Library/Perl/5.12 /Library/Perl/Updates/5.12.3 /System/Library/Perl/5.12/darwin-thread-multi-2level /System/Library/Perl/5.12 /System/Library/Perl/Extras/5.12/darwin-thread-multi-2level /System/Library/Perl/Extras/5.12 .) at bin/gmod_add_organism.pl line 7. BEGIN failed--compilation aborted at bin/gmod_add_organism.pl line 7. It looks like some developer's home directories got checked in, where there should in fact be "./lib/". So I tried: export PERL5LIB=./blib/lib/:./lib But that yields a new error: … Can't locate Bio/Chado/Schema.pm in @INC (@INC contains: /home/scott/cvs_stuff/schema/chado/lib /home/cain/cvs_stuff/schema/chado/lib ./blib/lib/ ./lib /Library/Perl/5.12/darwin-thread-multi-2level /Library/Perl/5.12 /Network/Library/Perl/5.12/darwin-thread-multi-2level /Network/Library/Perl/5.12 /Library/Perl/Updates/5.12.3 /System/Library/Perl/5.12/darwin-thread-multi-2level /System/Library/Perl/5.12 /System/Library/Perl/Extras/5.12/darwin-thread-multi-2level /System/Library/Perl/Extras/5.12 .) at bin/gmod_add_organism.pl line 9. BEGIN failed--compilation aborted at bin/gmod_add_organism.pl line 9. Confucius:chado-1.2 mdondrup$ And there is indeed no such module present in the package. Best Michael Dondrup Post-doctoral researcher The Sea Lice Research Centre Department of Informatics University of Bergen Thormøhlensgate 55, N-5008 Bergen, Norway |