From: Suzanna L. <su...@be...> - 2011-10-24 16:32:41
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Good idea. I'll pass it on to Tony and Eleanor at UniProt. On Oct 24, 2011, at 7:46 AM, Josh Goodman wrote: > Hi Suzi, > > I would suggest adding the assembly and annotation release numbers used for the various reference > set species when possible. > > Josh > > > On 10/20/2011 04:30 PM, Suzanna Lewis wrote: >> Yes, Ben is absolutely right. For more information you can look here: http://www.ebi.ac.uk/reference_proteomes/ >> >> And of course we really want to hear from all of you. Involvement and feedback are really wanted! >> >> I think the phylogenetic trees GO is using are soon to be available programmatically, if not today then certainly by the end of the year. the new GO architecture (all the behind the scenes stuff) is all services based. >> >> -S >> >> On Oct 20, 2011, at 11:04 AM, Benjamin Hitz wrote: >> >>> Hi gmod. Hope everyone had a good time in Toronto; sorry I couldn't make it. >>> Kalpana gave us a report on the meeting and something stuck out at us that I though we should follow up on - the discussion on MOD interoperation by Josh Goodman. >>> >>> There were no notes to confirm, but message we received back at SGD was that it was difficult for MODs to communicate without some common ortholog discussion. >>> I know there is not a huge overlap in meeting attendees between GMOD meeting and GO consortium meetings, BUT all the major and most minor mods are part of GO - and GO has essentially "solved" this problem, or at least has decided on common protein sets and a set of orthologs across model organisms. I am not personally part of this GO subproject, but certainly we should work together with GO on this. >>> >>> We are planning to re-do SGD's software in the next couple years and I would like to use whatever GMOD common REST API (and I suppose might as well implement SADI as well) from the beginning... whatever that API happens to be. Oh, but I can 99% guarentee we won't use CHADO - and I know worm, mouse, zfin, etc. don't either, so we should think about generic implemention of the REST API (as a group) >>> >>> Ben >>> -- >>> Ben Hitz >>> Senior Scientific Programmer ** Saccharomyces Genome Database ** GO Consortium >>> Stanford University ** hi...@st... >>> >>> >>> >>> >>> >>> ------------------------------------------------------------------------------ >>> The demand for IT networking professionals continues to grow, and the >>> demand for specialized networking skills is growing even more rapidly. >>> Take a complimentary Learning@Cisco Self-Assessment and learn >>> about Cisco certifications, training, and career opportunities. >>> http://p.sf.net/sfu/cisco-dev2dev >>> _______________________________________________ >>> Gmod-devel mailing list >>> Gmo...@li... >>> https://lists.sourceforge.net/lists/listinfo/gmod-devel >> >> >> ------------------------------------------------------------------------------ >> The demand for IT networking professionals continues to grow, and the >> demand for specialized networking skills is growing even more rapidly. >> Take a complimentary Learning@Cisco Self-Assessment and learn >> about Cisco certifications, training, and career opportunities. >> http://p.sf.net/sfu/cisco-dev2dev >> _______________________________________________ >> Gmod-devel mailing list >> Gmo...@li... >> https://lists.sourceforge.net/lists/listinfo/gmod-devel >> |