Menu
▾
▴
[Gmod-gbrowse-cmts] [GMOD/GBrowse] f871d6: Merge commit 'a9ec659cf3e808bc2e576262aae5be75cc27...
|
From: Lincoln S. <lin...@gm...> - 2011-07-04 18:04:02
|
Branch: refs/heads/development Home: https://github.com/GMOD/GBrowse Commit: f871d69db25475d54536ef063847fd07a505db82 https://github.com/GMOD/GBrowse/commit/f871d69db25475d54536ef063847fd07a505db82 Author: Lincoln Stein <lin...@gm...> Date: 2011-06-09 (Thu, 09 Jun 2011) Changed paths: M Changes M lib/Bio/Graphics/Browser2/DataSource.pm M lib/Bio/Graphics/Browser2/Region.pm M lib/Bio/Graphics/Browser2/Render/TrackConfig.pm M lib/Bio/Graphics/Browser2/RenderPanels.pm Log Message: ----------- Merge commit 'a9ec659cf3e808bc2e576262aae5be75cc276a1c' Commit: c158040f1a762f1fdefdf446eea0f0f99d87a9c4 https://github.com/GMOD/GBrowse/commit/c158040f1a762f1fdefdf446eea0f0f99d87a9c4 Author: Jason Stajich <ja...@bi...> Date: 2011-06-09 (Thu, 09 Jun 2011) Changed paths: M README Log Message: ----------- remove reference to SVN repo Commit: a71aa42daa7dcab8c136c72eb1ba5ad2cad24132 https://github.com/GMOD/GBrowse/commit/a71aa42daa7dcab8c136c72eb1ba5ad2cad24132 Author: Lincoln Stein <lin...@gm...> Date: 2011-06-09 (Thu, 09 Jun 2011) Changed paths: M lib/Bio/Graphics/Browser2/RenderPanels.pm Log Message: ----------- benchmark enhancements; fixed crash with attempt to take log of negative Commit: 41bf0824bdfd477b1ee50d7077e98d0834de2253 https://github.com/GMOD/GBrowse/commit/41bf0824bdfd477b1ee50d7077e98d0834de2253 Author: Lincoln Stein <lin...@gm...> Date: 2011-06-09 (Thu, 09 Jun 2011) Changed paths: M Changes M lib/Bio/Graphics/Browser2.pm M lib/Bio/Graphics/Browser2/RenderPanels.pm Log Message: ----------- bumped version number and removed dangling debug statement Commit: 74822f13294e4ce6f837aaa572ae521f9e03930e https://github.com/GMOD/GBrowse/commit/74822f13294e4ce6f837aaa572ae521f9e03930e Author: Lincoln Stein <lin...@gm...> Date: 2011-06-09 (Thu, 09 Jun 2011) Changed paths: M Changes M cgi-bin/gbrowse_img Log Message: ----------- make SVG images download as type application/svg+xml rather than triggering inline display behavior. Commit: 4c1c9bd542f2f49931c9acde09583573a4a52c49 https://github.com/GMOD/GBrowse/commit/4c1c9bd542f2f49931c9acde09583573a4a52c49 Author: Lincoln Stein <lin...@gm...> Date: 2011-06-09 (Thu, 09 Jun 2011) Changed paths: M README Log Message: ----------- Merge branch 'master' of github.com:GMOD/GBrowse Commit: 4b4aa6b80c84a39f7ef2dd9dd418440aa6ad4a7a https://github.com/GMOD/GBrowse/commit/4b4aa6b80c84a39f7ef2dd9dd418440aa6ad4a7a Author: Lincoln Stein <lin...@gm...> Date: 2011-06-10 (Fri, 10 Jun 2011) Changed paths: M Build.PL M Changes Log Message: ----------- update Text::ParseWords requirement to 3.27 to avoid parse errors in subtrack definitions Commit: bd7724731dd926dbada3a1aaec9bfe1f2b49f1dc https://github.com/GMOD/GBrowse/commit/bd7724731dd926dbada3a1aaec9bfe1f2b49f1dc Author: Lincoln Stein <lin...@gm...> Date: 2011-06-28 (Tue, 28 Jun 2011) Changed paths: M htdocs/js/controller.js Log Message: ----------- fix broken add tracks in IE8 Commit: f820b30eb451fb1dfc71f9c1040254d92a6248c1 https://github.com/GMOD/GBrowse/commit/f820b30eb451fb1dfc71f9c1040254d92a6248c1 Author: Lincoln Stein <lin...@gm...> Date: 2011-06-28 (Tue, 28 Jun 2011) Changed paths: M Build.PL M Changes Log Message: ----------- update Text::ParseWords requirement to 3.27 to avoid parse errors in subtrack definitions Commit: c6d7179add92b940d1f078dde14e4b703fdc6148 https://github.com/GMOD/GBrowse/commit/c6d7179add92b940d1f078dde14e4b703fdc6148 Author: Lincoln Stein <lin...@gm...> Date: 2011-06-28 (Tue, 28 Jun 2011) Log Message: ----------- Merge branch 'master' of github.com:GMOD/GBrowse Commit: 40d20538853d10348c9e2bbea642ef4df1ab606b https://github.com/GMOD/GBrowse/commit/40d20538853d10348c9e2bbea642ef4df1ab606b Author: Lincoln Stein <lin...@gm...> Date: 2011-06-28 (Tue, 28 Jun 2011) Changed paths: M Changes Log Message: ----------- fix broken add tracks in IE8 -- added to changelog Commit: 33ae992301bf9696e15cf7789f06cb55205ae0f7 https://github.com/GMOD/GBrowse/commit/33ae992301bf9696e15cf7789f06cb55205ae0f7 Author: Lincoln Stein <lin...@gm...> Date: 2011-06-29 (Wed, 29 Jun 2011) Changed paths: M Changes M lib/Bio/Graphics/Browser2/TrackDumper.pm Log Message: ----------- Fix bug which prevented "download all data from this track" from working for BAM/SAM tracks. Commit: ac2e1ed6abec498031f626cc7ac7759e3ab77c33 https://github.com/GMOD/GBrowse/commit/ac2e1ed6abec498031f626cc7ac7759e3ab77c33 Author: Lincoln Stein <lin...@gm...> Date: 2011-06-29 (Wed, 29 Jun 2011) Changed paths: M Changes M conf/languages/en.pm M lib/Bio/Graphics/Browser2/I18n.pm Log Message: ----------- Fix bug in English translation that was causing other languages to take precedence even when browser was configured to accept them with lower precedence. Commit: 7671c6198ec5c3f92f494fc9c413e1ee946d436a https://github.com/GMOD/GBrowse/commit/7671c6198ec5c3f92f494fc9c413e1ee946d436a Author: Lincoln Stein <lin...@gm...> Date: 2011-06-29 (Wed, 29 Jun 2011) Changed paths: M lib/Bio/Graphics/Browser2.pm Log Message: ----------- bump version to 2.39 Commit: aef9e28bc012832ec045fdee879afa8264d7db74 https://github.com/GMOD/GBrowse/commit/aef9e28bc012832ec045fdee879afa8264d7db74 Author: Lincoln Stein <lin...@gm...> Date: 2011-07-02 (Sat, 02 Jul 2011) Changed paths: A bin/gbrowse_attach_slaves.pl Log Message: ----------- add EC2 script for launching slaves on AWS Commit: ee3d5973734719a7a5f5d6c1fb671291bbf83d83 https://github.com/GMOD/GBrowse/commit/ee3d5973734719a7a5f5d6c1fb671291bbf83d83 Author: Lincoln Stein <lin...@gm...> Date: 2011-07-03 (Sun, 03 Jul 2011) Changed paths: M Changes M bin/gbrowse_attach_slaves.pl Log Message: ----------- add gbrowse_attach_slaves.pl support script for creating and attaching rendering slave processes to the gbrowse AMI. Commit: d3047fc90c77e73d1f93c561136f03de8aab4f07 https://github.com/GMOD/GBrowse/commit/d3047fc90c77e73d1f93c561136f03de8aab4f07 Author: Lincoln Stein <lin...@gm...> Date: 2011-07-03 (Sun, 03 Jul 2011) Changed paths: M bin/gbrowse_attach_slaves.pl Log Message: ----------- made the gbrowse_attach_slaves.pl script more user friendly Commit: 87ec591fe54a3ea7e9449e5cbd26efe8fbc10a29 https://github.com/GMOD/GBrowse/commit/87ec591fe54a3ea7e9449e5cbd26efe8fbc10a29 Author: Lincoln Stein <lin...@gm...> Date: 2011-07-04 (Mon, 04 Jul 2011) Changed paths: M Build.PL M Changes M MANIFEST M conf/GBrowse.conf M lib/Bio/Graphics/Browser2/AuthorizedFeatureFile.pm M lib/Bio/Graphics/Browser2/DataSource.pm M lib/Bio/Graphics/Browser2/Render.pm M lib/Bio/Graphics/Browser2/Render/HTML.pm A lib/Bio/Graphics/Browser2/Render/HTML/TrackListing.pm A lib/Bio/Graphics/Browser2/Render/HTML/TrackListing/Categories.pm M lib/Bio/Graphics/Browser2/SubtrackTable.pm Log Message: ----------- Merge branch 'development' of github.com:GMOD/GBrowse into development Compare: https://github.com/GMOD/GBrowse/compare/bd080c9...87ec591 |