From: David E. <em...@mo...> - 2010-10-28 14:51:26
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What do you expect to be doing with the phred scores for particular regions? Will you need to be computing on them frequently, for instance? -D >From gmo...@li... Thu Oct 28 10:35:34 2010 >> Date: Thu, 28 Oct 2010 10:34:55 -0400 >> To: David Emmert <em...@mo...> >> Cc: "gmo...@li..." <gmo...@li...> >> Subject: Re: [Gmod-schema] sequence quality values >> >> Standard phred quality look like this: >> >> 45 65 67 56 67 78 ... >> >> (if you are lucky! - the higher the better). These are scores for each nucleotide, in order, separated by a space, of course they can also be single digit values in there. >> >> cheers >> Lukas >> >> On Oct 28, 2010, at 10:25 AM, David Emmert wrote: >> >> > Hi Lukas, >> > >> > I'm curious. What does the quality values data look like? >> > Is it continuous data, or ??? >> > >> > -Dave >> > >> > From gmo...@li... Thu Oct 28 10:16:43 2010 >> >>> To: Lukas Mueller <la...@co...> >> >>> Cc: gmod schema <gmo...@li...> >> >>> Subject: Re: [Gmod-schema] sequence quality values >> >>> >> >>> Hi Lukas, >> >>> >> >>> Given that there's currently no place for them, I'd say it's a featureprop :-) >> >>> >> >>> Scott >> >>> >> >>> >> >>> On Thu, Oct 28, 2010 at 9:49 AM, Lukas Mueller <la...@co...> wrote: >> >>>> Hi, >> >>>> >> >>>> how do you store quality values for sequences in the feature table? (Don''t tell me it's a feature prop :-) >> >>>> >> >>>> cheers >> >>>> Lukas >> >>>> >> >>>> >> >>>> ------------------------------------------------------------------------------ >> >>>> Nokia and AT&T present the 2010 Calling All Innovators-North America contest >> >>>> Create new apps & games for the Nokia N8 for consumers in U.S. and Canada >> >>>> $10 million total in prizes - $4M cash, 500 devices, nearly $6M in marketing >> >>>> Develop with Nokia Qt SDK, Web Runtime, or Java and Publish to Ovi Store >> >>>> http://p.sf.net/sfu/nokia-dev2dev >> >>>> _______________________________________________ >> >>>> Gmod-schema mailing list >> >>>> Gmo...@li... >> >>>> https://lists.sourceforge.net/lists/listinfo/gmod-schema >> >>>> >> >>> >> >>> >> >>> >> >>> -- >> >>> ------------------------------------------------------------------------ >> >>> Scott Cain, Ph. D. scott at scottcain dot net >> >>> GMOD Coordinator (http://gmod.org/) 216-392-3087 >> >>> Ontario Institute for Cancer Research >> >>> >> >>> ------------------------------------------------------------------------------ >> >>> Nokia and AT&T present the 2010 Calling All Innovators-North America contest >> >>> Create new apps & games for the Nokia N8 for consumers in U.S. and Canada >> >>> $10 million total in prizes - $4M cash, 500 devices, nearly $6M in marketing >> >>> Develop with Nokia Qt SDK, Web Runtime, or Java and Publish to Ovi Store >> >>> http://p.sf.net/sfu/nokia-dev2dev >> >>> _______________________________________________ >> >>> Gmod-schema mailing list >> >>> Gmo...@li... >> >>> https://lists.sourceforge.net/lists/listinfo/gmod-schema >> >>> >> >>> >> >> >> ------------------------------------------------------------------------------ >> Nokia and AT&T present the 2010 Calling All Innovators-North America contest >> Create new apps & games for the Nokia N8 for consumers in U.S. and Canada >> $10 million total in prizes - $4M cash, 500 devices, nearly $6M in marketing >> Develop with Nokia Qt SDK, Web Runtime, or Java and Publish to Ovi Store >> http://p.sf.net/sfu/nokia-dev2dev >> _______________________________________________ >> Gmod-schema mailing list >> Gmo...@li... >> https://lists.sourceforge.net/lists/listinfo/gmod-schema >> >> |