From: Erick A. <eri...@gm...> - 2009-10-07 14:03:43
|
Hi Lincoln, I have just SVN-updated my GBrowse 2 install. The high-res image generations works fine. However, the PDF generation is still broken :-( Could you please take a look at it? On the other hand, we were wondering whether the 'High-res Image' should actually display (generate) an image of the actual tracks layout that are displayed? The GBrowse 2.0 interface (AJAX-based) allows users to move tracks (which is very useful) and stack them into various ways (change_track_order). Nevertheless, if we move any track and then click on 'High-res Image', we get an image displaying the initial layout and not the one resulting after making some moves :-( Would that be possible to have? I have realised that the directory (modules) ...../Bio/Graphics/Browser has been renamed to ...../Bio/Graphics/Browser2 , is it still needed to cascade this renaming in the plugin "Reporter.pm"? Finally, the regression test are still reporting the same failures as reported recently. thanks again, Erick 2009/10/6 Lincoln Stein <lin...@gm...>: > Sorry about the regression test failures. This will be fixed sometime today. > > Lincoln > > On Tue, Oct 6, 2009 at 5:03 AM, Erick Antezana <eri...@gm...> > wrote: >> >> Hi Lincoln, >> >> I have just SVN-updated my GBrowse install. After launching the command >> "Build test", I got a few warning and error messages: >> >> >> t/02.rearchitecture.t ..... 1/90 Use of uninitialized value $dbid in hash >> element at >> /home/user/Generic-Genome-Browser/t/../lib/Bio/Graphics/Browser2/DataSource.pm >> line 530. >> >> .... >> >> Can't locate object method "add_user_type" via package >> "Bio::Graphics::Browser2::DataSource" at t/02.rearchitecture.t line 263. >> t/02.rearchitecture.t ..... Dubious, test returned 255 (wstat 65280, >> 0xff00) >> >> >> .... >> >> t/03.render.t ............. 123/148 Can't locate object method >> "delete_track" via package "Bio::Graphics::Browser2::UserTracks" at >> t/03.render.t line 496. >> t/03.render.t ............. Dubious, test returned 255 (wstat 65280, >> 0xff00) >> >> >> I will come back to you later with the result of the tests regarding th >> high-res image generation. >> >> thanks, >> Erick >> >> 2009/10/5 Lincoln Stein <lin...@gm...> >>> >>> Hi Erick, >>> >>> Could you do an SVN update to pick up the fix? If you are not comfortable >>> with that I'll release a new version to CPAN tomorrow. >>> >>> Lincoln >>> >>> On Mon, Oct 5, 2009 at 2:54 PM, Erick Antezana <eri...@gm...> >>> wrote: >>>> >>>> Lincoln, >>>> >>>> it is happening in GBrowse 2.0 >>>> >>>> thanks, >>>> Erick >>>> >>>> 2009/10/5 Lincoln Stein <lin...@gm...> >>>>> >>>>> Erick, is this happening in GBrowse 1.7 or 2.0? >>>>> >>>>> Lincoln >>>>> >>>>> On Mon, Oct 5, 2009 at 9:37 AM, Erick Antezana >>>>> <eri...@gm...> wrote: >>>>>> >>>>>> Hello, >>>>>> >>>>>> I have just updated my Bioperl install (live version). I tried to >>>>>> test the generation of a high-resolution image (by clicking on the link >>>>>> found in the header of the browser) and I got the following Apache error >>>>>> message (see full error log messages at the end of this email): >>>>>> >>>>>> Can't locate object method "create_cookie" via package >>>>>> "Bio::Graphics::Browser::Render" at ...../cgi-bin/gbrowse_img line 112. >>>>>> >>>>>> There seems to be a non-implemented subroutine? >>>>>> >>>>>> Some more info: >>>>>> >>>>>> GD version: 2.44 >>>>>> GD::SVG version 0.33 >>>>>> libgd version 2.0.33 >>>>>> >>>>>> >>>>>> On the other hand, I have also tried to get an image in PDF ([Download >>>>>> PDF] link) and I got the same error message as above (see full log at the >>>>>> end of this email) but with some more details about some non-implemented-yet >>>>>> subroutines (e.g. clip, saveAlpha, alphaBlending). >>>>>> >>>>>> Any suggestions? >>>>>> Erick >>>>>> >>>>>> p.s.1. Error log while trying to retrieve a high-res image >>>>>> >>>>>> [error] Useless use of a constant in void context at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/x86_64-linux/Bio/Graphics/Browser/Render.pm >>>>>> line 469, <DATA> line 192., referer: http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] [14433] RUN(): GET: http://erick/cgi-bin/gbrowse/yeast/ >>>>>> make_image=GD%3A%3ASVG at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/x86_64-linux/Bio/Graphics/Browser/Render.pm >>>>>> line 147., referer: http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] event(make_image) at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/x86_64-linux/Bio/Graphics/Browser/Render.pm >>>>>> line 266., referer: http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] Use of uninitialized value $mime_type in concatenation (.) or >>>>>> string at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/x86_64-linux/Bio/Graphics/Browser/Render.pm >>>>>> line 227., referer: http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] [14433] asynchronous event returning status=302, mime-type= >>>>>> at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/x86_64-linux/Bio/Graphics/Browser/Render.pm >>>>>> line 227., referer: http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] [14433] asynchronous exit at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/x86_64-linux/Bio/Graphics/Browser/Render.pm >>>>>> line 162., referer: http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] Useless use of a constant in void context at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/x86_64-linux/Bio/Graphics/Browser/Render.pm >>>>>> line 469, <DATA> line 192., referer: http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] init() at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/x86_64-linux/Bio/Graphics/Browser/Render.pm >>>>>> line 209., referer: http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] set_default_state() at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/x86_64-linux/Bio/Graphics/Browser/Render.pm >>>>>> line 210., referer: http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] init_database() at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/x86_64-linux/Bio/Graphics/Browser/Render.pm >>>>>> line 212., referer: http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] init_plugins() at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/x86_64-linux/Bio/Graphics/Browser/Render.pm >>>>>> line 214., referer: http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] init_remote_sources() at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/x86_64-linux/Bio/Graphics/Browser/Render.pm >>>>>> line 216., referer: http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] initializing uploaded files... at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/x86_64-linux/Bio/Graphics/Browser/UploadSet.pm >>>>>> line 20., referer: http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] add_files_from_state() at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/x86_64-linux/Bio/Graphics/Browser/UploadSet.pm >>>>>> line 35., referer: http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] name_file() returns => >>>>>> (file:foo,/data/tmp/tmp_apache/userdata/yeast/uploads/erick/foo) at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/x86_64-linux/Bio/Graphics/Browser/UserData.pm >>>>>> line 127., referer: http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] @@@ /data/tmp/tmp_apache/userdata/yeast/uploads/erick/, >>>>>> referer: http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] init done at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/x86_64-linux/Bio/Graphics/Browser/Render.pm >>>>>> line 218., referer: http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] [14434] update_state() at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/x86_64-linux/Bio/Graphics/Browser/Render.pm >>>>>> line 1909., referer: http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] [14434] CGI updated at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/x86_64-linux/Bio/Graphics/Browser/Render.pm >>>>>> line 1916., referer: http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] [14434] update_state() done at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/x86_64-linux/Bio/Graphics/Browser/Render.pm >>>>>> line 1932., referer: http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] FEATURESET = >>>>>> Bio::Graphics::Browser::PluginSet=HASH(0x45a9a90), sources = at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/x86_64-linux/Bio/Graphics/Browser/Render.pm >>>>>> line 3493., referer: http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] FEATURESET = >>>>>> Bio::Graphics::Browser::UploadSet=HASH(0x500ac00), sources = at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/x86_64-linux/Bio/Graphics/Browser/Render.pm >>>>>> line 3493., referer: http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] FEATURESET = >>>>>> Bio::Graphics::Browser::RemoteSet=HASH(0x500ac48), sources = at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/x86_64-linux/Bio/Graphics/Browser/Render.pm >>>>>> line 3493., referer: http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] FEATURE files = at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/x86_64-linux/Bio/Graphics/Browser/Render.pm >>>>>> line 3502., referer: http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] Can't locate object method "create_cookie" via package >>>>>> "Bio::Graphics::Browser::Render" at >>>>>> /tools/bioinfo/apache/cgi-bin/Tools/GeneticAndGenomic/GGB/gbrowse_img line >>>>>> 112., referer: http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] Premature end of script headers: gbrowse_img, referer: >>>>>> http://erick/cgi-bin/gbrowse/yeast/ >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> p.s.2. Error log while asking for an image in PDF format: >>>>>> >>>>>> [error] Useless use of a constant in void context at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/x86_64-linux/Bio/Graphics/Browser/Render.pm >>>>>> line 469, <DATA> line 192., referer: http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] [14736] RUN(): GET: http://erick/cgi-bin/gbrowse/yeast/ >>>>>> make_image=PDF at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/x86_64-linux/Bio/Graphics/Browser/Render.pm >>>>>> line 147., referer: http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] event(make_image) at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/x86_64-linux/Bio/Graphics/Browser/Render.pm >>>>>> line 266., referer: http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] Use of uninitialized value $mime_type in concatenation (.) or >>>>>> string at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/x86_64-linux/Bio/Graphics/Browser/Render.pm >>>>>> line 227., referer: http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] [14736] asynchronous event returning status=302, mime-type= >>>>>> at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/x86_64-linux/Bio/Graphics/Browser/Render.pm >>>>>> line 227., referer: http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] [14736] asynchronous exit at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/x86_64-linux/Bio/Graphics/Browser/Render.pm >>>>>> line 162., referer: http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] Useless use of a constant in void context at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/x86_64-linux/Bio/Graphics/Browser/Render.pm >>>>>> line 469, <DATA> line 192., referer: http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] init() at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/x86_64-linux/Bio/Graphics/Browser/Render.pm >>>>>> line 209., referer: http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] set_default_state() at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/x86_64-linux/Bio/Graphics/Browser/Render.pm >>>>>> line 210., referer: http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] init_database() at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/x86_64-linux/Bio/Graphics/Browser/Render.pm >>>>>> line 212., referer: http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] init_plugins() at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/x86_64-linux/Bio/Graphics/Browser/Render.pm >>>>>> line 214., referer: http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] init_remote_sources() at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/x86_64-linux/Bio/Graphics/Browser/Render.pm >>>>>> line 216., referer: http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] initializing uploaded files... at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/x86_64-linux/Bio/Graphics/Browser/UploadSet.pm >>>>>> line 20., referer: http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] add_files_from_state() at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/x86_64-linux/Bio/Graphics/Browser/UploadSet.pm >>>>>> line 35., referer: http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] /data/tmp/tmp_apache/userdata/yeast/uploads/erick/foo, >>>>>> referer: http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] name_file() returns => >>>>>> (file:foo,/data/tmp/tmp_apache/userdata/yeast/uploads/erick/foo) at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/x86_64-linux/Bio/Graphics/Browser/UserData.pm >>>>>> line 127., referer: http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] @@@ /data/tmp/tmp_apache/userdata/yeast/uploads/erick/, >>>>>> referer: http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] init done at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/x86_64-linux/Bio/Graphics/Browser/Render.pm >>>>>> line 218., referer: http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] [14737] update_state() at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/x86_64-linux/Bio/Graphics/Browser/Render.pm >>>>>> line 1909., referer: http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] [14737] CGI updated at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/x86_64-linux/Bio/Graphics/Browser/Render.pm >>>>>> line 1916., referer: http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] [14737] update_state() done at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/x86_64-linux/Bio/Graphics/Browser/Render.pm >>>>>> line 1932., referer: http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] FEATURESET = >>>>>> Bio::Graphics::Browser::PluginSet=HASH(0x1e655d60), sources = at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/x86_64-linux/Bio/Graphics/Browser/Render.pm >>>>>> line 3493., referer: http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] FEATURESET = >>>>>> Bio::Graphics::Browser::UploadSet=HASH(0x1f0adc30), sources = at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/x86_64-linux/Bio/Graphics/Browser/Render.pm >>>>>> line 3493., referer: http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] FEATURESET = >>>>>> Bio::Graphics::Browser::RemoteSet=HASH(0x1f0adc78), sources = at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/x86_64-linux/Bio/Graphics/Browser/Render.pm >>>>>> line 3493., referer: http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] FEATURE files = at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/x86_64-linux/Bio/Graphics/Browser/Render.pm >>>>>> line 3502., referer: http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] GD method saveAlpha is not implemented in GD::SVG at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/GD/SVG.pm line 196., referer: >>>>>> http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] GD method alphaBlending is not implemented in GD::SVG at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/GD/SVG.pm line 196., referer: >>>>>> http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] GD method fill is not implemented in GD::SVG at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/GD/SVG.pm line 196., referer: >>>>>> http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] GD method alphaBlending is not implemented in GD::SVG at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/GD/SVG.pm line 196., referer: >>>>>> http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] GD method clip is not implemented in GD::SVG at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/GD/SVG.pm line 196., referer: >>>>>> http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] GD method clip is not implemented in GD::SVG at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/GD/SVG.pm line 196., referer: >>>>>> http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] GD method clip is not implemented in GD::SVG at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/GD/SVG.pm line 196., referer: >>>>>> http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] GD method saveAlpha is not implemented in GD::SVG at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/GD/SVG.pm line 196., referer: >>>>>> http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] GD method alphaBlending is not implemented in GD::SVG at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/GD/SVG.pm line 196., referer: >>>>>> http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] GD method fill is not implemented in GD::SVG at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/GD/SVG.pm line 196., referer: >>>>>> http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] GD method alphaBlending is not implemented in GD::SVG at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/GD/SVG.pm line 196., referer: >>>>>> http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] GD method clip is not implemented in GD::SVG at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/GD/SVG.pm line 196., referer: >>>>>> http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] GD method clip is not implemented in GD::SVG at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/GD/SVG.pm line 196., referer: >>>>>> http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] GD method clip is not implemented in GD::SVG at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/GD/SVG.pm line 196., referer: >>>>>> http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] GD method saveAlpha is not implemented in GD::SVG at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/GD/SVG.pm line 196., referer: >>>>>> http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] GD method alphaBlending is not implemented in GD::SVG at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/GD/SVG.pm line 196., referer: >>>>>> http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] GD method fill is not implemented in GD::SVG at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/GD/SVG.pm line 196., referer: >>>>>> http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] GD method alphaBlending is not implemented in GD::SVG at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/GD/SVG.pm line 196., referer: >>>>>> http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] GD method clip is not implemented in GD::SVG at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/GD/SVG.pm line 196., referer: >>>>>> http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] GD method clip is not implemented in GD::SVG at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/GD/SVG.pm line 196., referer: >>>>>> http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] GD method clip is not implemented in GD::SVG at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/GD/SVG.pm line 196., referer: >>>>>> http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] GD method saveAlpha is not implemented in GD::SVG at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/GD/SVG.pm line 196., referer: >>>>>> http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] GD method alphaBlending is not implemented in GD::SVG at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/GD/SVG.pm line 196., referer: >>>>>> http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] GD method fill is not implemented in GD::SVG at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/GD/SVG.pm line 196., referer: >>>>>> http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] GD method alphaBlending is not implemented in GD::SVG at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/GD/SVG.pm line 196., referer: >>>>>> http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] GD method clip is not implemented in GD::SVG at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/GD/SVG.pm line 196., referer: >>>>>> http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] GD method clip is not implemented in GD::SVG at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/GD/SVG.pm line 196., referer: >>>>>> http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] GD method clip is not implemented in GD::SVG at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/GD/SVG.pm line 196., referer: >>>>>> http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] GD method saveAlpha is not implemented in GD::SVG at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/GD/SVG.pm line 196., referer: >>>>>> http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] GD method alphaBlending is not implemented in GD::SVG at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/GD/SVG.pm line 196., referer: >>>>>> http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] GD method fill is not implemented in GD::SVG at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/GD/SVG.pm line 196., referer: >>>>>> http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] GD method alphaBlending is not implemented in GD::SVG at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/GD/SVG.pm line 196., referer: >>>>>> http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] GD method clip is not implemented in GD::SVG at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/GD/SVG.pm line 196., referer: >>>>>> http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] GD method clip is not implemented in GD::SVG at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/GD/SVG.pm line 196., referer: >>>>>> http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] GD method clip is not implemented in GD::SVG at >>>>>> /usr/local/lib/perl5/site_perl/5.10.0/GD/SVG.pm line 196., referer: >>>>>> http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] Can't locate object method "create_cookie" via package >>>>>> "Bio::Graphics::Browser::Render" at >>>>>> /tools/bioinfo/apache/cgi-bin/Tools/GeneticAndGenomic/GGB/gbrowse_img line >>>>>> 112., referer: http://erick/cgi-bin/gbrowse/yeast/ >>>>>> [error] Premature end of script headers: gbrowse_img, referer: >>>>>> http://erick/cgi-bin/gbrowse/yeast/ >>>>>> >>>>>> >>>>>> ------------------------------------------------------------------------------ >>>>>> Come build with us! The BlackBerry® Developer Conference in SF, CA >>>>>> is the only developer event you need to attend this year. Jumpstart >>>>>> your >>>>>> developing skills, take BlackBerry mobile applications to market and >>>>>> stay >>>>>> ahead of the curve. Join us from November 9-12, 2009. Register >>>>>> now! >>>>>> http://p.sf.net/sfu/devconf >>>>>> _______________________________________________ >>>>>> Gmod-gbrowse mailing list >>>>>> Gmo...@li... >>>>>> https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse >>>>>> >>>>> >>>>> >>>>> >>>>> -- >>>>> Lincoln D. Stein >>>>> Director, Informatics and Biocomputing Platform >>>>> Ontario Institute for Cancer Research >>>>> 101 College St., Suite 800 >>>>> Toronto, ON, Canada M5G0A3 >>>>> 416 673-8514 >>>>> Assistant: Renata Musa <Ren...@oi...> >>>> >>> >>> >>> >>> -- >>> Lincoln D. Stein >>> Director, Informatics and Biocomputing Platform >>> Ontario Institute for Cancer Research >>> 101 College St., Suite 800 >>> Toronto, ON, Canada M5G0A3 >>> 416 673-8514 >>> Assistant: Renata Musa <Ren...@oi...> >> > > > > -- > Lincoln D. Stein > Director, Informatics and Biocomputing Platform > Ontario Institute for Cancer Research > 101 College St., Suite 800 > Toronto, ON, Canada M5G0A3 > 416 673-8514 > Assistant: Renata Musa <Ren...@oi...> > |