Re: [Gmod-gbrowse] gbrowse details

[Scott C. <cai...@gm...>]

After Dave and I talked, it occurred to me that you might be able to
do something with callbacks in the gbrowse configuration file for the
database, but it really depends on how the data is represented in the
database.  See

  http://gmod.org/wiki/GBrowse_Configuration_HOWTO#Controlling_the_gbrowse_details_page

for more information.

Scott


On Thu, Aug 28, 2008 at 2:46 PM, Dave Clements, GMOD Help Desk
<gmo...@go...> wrote:
> Hi Manoj,
>
> Scott Cain and I briefly discussed your question.  You'll need to
> change the default behavior of GBrowse.  I haven't done (or tried
> this), but two things come to mind.
>
> You could write an external CGI script to read and then render the EST
> sequence from the database.  You would then list the CGI in a link.
> See
>
>  http://gmod.org/gbrowse-cgi/tutorial/tutorial.html#linking
>
>
> If the EST sequences are in your GBrowse database, it may also be
> possible to get the information using a callback.  See
>
>  http://gmod.org/gbrowse-cgi/tutorial/tutorial.html#multiple_alignments
>
> Either option requires you to write some Perl code.
>
>
> Does anyone else have suggestions (or better yet code) for this situation?
>
> Thanks,
>
> Dave C
> GMOD Help Desk
>
> On Tue, Aug 26, 2008 at 12:25 PM, manoj-samanta
> <man...@sy...> wrote:
>>
>> Hello,
>>
>> I am using gbrowse 1.68 version and have a quick question.
>>
>> I aligned a set of EST sequences with a reference genome that I am working
>> on. They are loaded onto a chado database along with other information.
>>
>> When I click on the details view of an EST, gbrowse displays its sequence
>> reconstructed from the genome based on given coordinates. Is it possible to
>> get the original EST sequence from the details view instead of reconstructed
>> information?
>>
>> Thank you,
>> Manoj
>> --
>> View this message in context: http://www.nabble.com/gbrowse-details-tp19168645p19168645.html
>> Sent from the gmod-gbrowse mailing list archive at Nabble.com.
>>
>>
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-- 
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Scott Cain, Ph. D. cai...@gm...
GMOD Coordinator (http://gmod.org/) 216-392-3087
Cold Spring Harbor Laboratory